RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 ARHGEF3Q9NR81 526 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 KCND1Q9NSA2 647 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 THG1LQ9NWX6 298 aaKnown RBP10.37□□□□□ -0.75
CLN3-261ENST00000637686 OSER1Q9NX31 292 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 ARHGAP26Q9UNA1 814 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 USP3Q9Y6I4 520 aa10.37□□□□□ -0.75
CLN3-261ENST00000637686 ARNTLO00327 626 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 CHADO15335 359 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 THAP12O43422 761 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 MED7O43513 233 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 LCA5LO95447 670 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 OLFM2O95897 454 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 TBX18O95935 607 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 SETSIPP0DME0 302 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 MBL2P11226 248 aaPredicted RBP10.36□□□□□ -0.75
CLN3-261ENST00000637686 PLA2G4AP47712 749 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 RGS7P49802 495 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 TUBP50607 506 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 MLF2Q15773 248 aaPredicted RBP10.36□□□□□ -0.75
CLN3-261ENST00000637686 ZNF77Q15935 545 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 ARHGAP29Q52LW3 1261 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 HGSNATQ68CP4 663 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 TRIM68Q6AZZ1 485 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 PPP1R2P3Q6NXS1 205 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 PMF1Q6P1K2 205 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 DENND1BQ6P3S1 775 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 SCD5Q86SK9 330 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 VPS36Q86VN1 386 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 FBXL6Q8N531 539 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 FLCNQ8NFG4 579 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 TTC8Q8TAM2 541 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 CSGALNACT1Q8TDX6 532 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 KCTD13Q8WZ19 329 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 NDRG1Q92597 394 aaKnown RBP10.36□□□□□ -0.75
CLN3-261ENST00000637686 DNASE1L2Q92874 299 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 KCNF1Q9H3M0 494 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 TBC1D17Q9HA65 648 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 HEBP1Q9NRV9 189 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 GKN1Q9NS71 199 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 SMPD4Q9NXE4 827 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 CPQQ9Y646 472 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 MYO16Q9Y6X6 1858 aa10.36□□□□□ -0.75
CLN3-261ENST00000637686 COL4A3Q01955 1670 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 LEFTY2O00292 366 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 PIK3R2O00459 728 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 TLR5O60602 858 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 GABBR2O75899 941 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 ZBED1O96006 694 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 SKILP12757 684 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 RARGP13631 454 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 LCP1P13796 627 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 TCF3P15923 654 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 CLCN1P35523 988 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 CYLC1P35663 651 aaPredicted RBP10.35□□□□□ -0.75
CLN3-261ENST00000637686 VCPP55072 806 aaKnown RBP10.35□□□□□ -0.75
CLN3-261ENST00000637686 STARD6P59095 220 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 PRKCQQ04759 706 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 PTK2Q05397 1052 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 TNK2Q07912 1038 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 ADIGQ0VDE8 80 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 USP4Q13107 963 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 MTF1Q14872 753 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 ASTE1Q2TB18 679 aaPredicted RBP10.35□□□□□ -0.75
CLN3-261ENST00000637686 C10orf76Q5T2E6 689 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 CWF19L1Q69YN2 538 aaKnown RBP10.35□□□□□ -0.75
CLN3-261ENST00000637686 PM20D1Q6GTS8 502 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 CC2D1AQ6P1N0 951 aaPredicted RBP10.35□□□□□ -0.75
CLN3-261ENST00000637686 TPRG1Q6ZUI0 275 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 SLC47A2Q86VL8 602 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 SUGP1Q8IWZ8 645 aaKnown RBP10.35□□□□□ -0.75
CLN3-261ENST00000637686 SIX6OS1Q8N1H7 587 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 TXLNBQ8N3L3 684 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 SHDQ96IW2 340 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 HSFY1Q96LI6 401 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 FAM83CQ9BQN1 747 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 SYT11Q9BT88 431 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 ULBP1Q9BZM6 244 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 NACA2Q9H009 215 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 EBF3Q9H4W6 596 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 TRPV5Q9NQA5 729 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 CYLDQ9NQC7 956 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 GTSE1Q9NYZ3 720 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 ARHGAP20Q9P2F6 1191 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 NAGPAQ9UK23 515 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 NUDT5Q9UKK9 219 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 ZKSCAN5Q9Y2L8 839 aa10.35□□□□□ -0.75
CLN3-261ENST00000637686 EIF3CLB5ME19 914 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 SCAMP3O14828 347 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 MDM4O15151 490 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 CCP110O43303 1012 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 PI15O43692 258 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 RALAP11233 206 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 ARSAP15289 507 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 CD72P21854 359 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 AVPR2P30518 371 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 ATP5C1P36542 298 aaKnown RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 GPD2P43304 727 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 PSEN1P49768 467 aa10.34□□□□□ -0.75
CLN3-261ENST00000637686 KPNA1P52294 538 aaPredicted RBP10.34□□□□□ -0.75
CLN3-261ENST00000637686 YWHAGP61981 247 aaKnown RBP eCLIP10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms