RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 BHLHA9Q7RTU4 235 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 LRRTM3Q86VH5 581 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 JAMLQ86YT9 394 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 KLHL7Q8IXQ5 586 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 SLC39A11Q8N1S5 342 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 CLEC4CQ8WTT0 213 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 NKD2Q969F2 451 aaPredicted RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 TMEM169Q96HH4 297 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 PEBP4Q96S96 227 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 DCLK3Q9C098 648 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 MTIF3Q9H2K0 278 aaKnown RBP11.03□□□□□ -0.64
CLN3-248ENST00000636355 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.03□□□□□ -0.64
CLN3-248ENST00000636355 CHST7Q9NS84 486 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 ABCC13Q9NSE7 274 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.03□□□□□ -0.64
CLN3-248ENST00000636355 TMLHEQ9NVH6 421 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 IL37Q9NZH6 218 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 AMACRQ9UHK6 382 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 SCML2Q9UQR0 700 aa11.03□□□□□ -0.64
CLN3-248ENST00000636355 MTMR11A4FU01 709 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 CAPN9O14815 690 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 GRAP2O75791 330 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 GLUD2P49448 558 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 SULT1E1P49888 294 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 CACNA2D1P54289 1103 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 ATP11AP98196 1134 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 DSG1Q02413 1049 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 PTK6Q13882 451 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 BTG3Q14201 252 aaPredicted RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 TAF5Q15542 800 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 PSMD5Q16401 504 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 CDO1Q16878 200 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 C15orf59Q2T9L4 293 aaPredicted RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 DCAF6Q58WW2 860 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 RTP2Q5QGT7 225 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 ERMARDQ5T6L9 678 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 ACBD5Q5T8D3 534 aaPredicted RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 OTUD1Q5VV17 481 aaPredicted RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 DAB2IPQ5VWQ8 1189 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 TXNRD3NBQ6F5E7 133 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 AADACL2Q6P093 401 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 MSANTD2Q6P1R3 559 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 CCNI2Q6ZMN8 369 aaPredicted RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 SND1Q7KZF4 910 aaKnown RBP eCLIP11.02□□□□□ -0.65
CLN3-248ENST00000636355 GPRIN1Q7Z2K8 1008 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 DDX53Q86TM3 631 aaKnown RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 DEFB106AQ8N104 65 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 COLGALT1Q8NBJ5 622 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 KCTD6Q8NC69 237 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 AENQ8WTP8 325 aaKnown RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 OVCA2Q8WZ82 227 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 RAPGEF5Q92565 580 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 CAVIN3Q969G5 261 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 KCNK16Q96T55 309 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 ERP44Q9BS26 406 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 SNRNP25Q9BV90 132 aaKnown RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 SMOC2Q9H3U7 446 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 ZWILCHQ9H900 591 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 VIPAS39Q9H9C1 493 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 OLA1Q9NTK5 396 aaKnown RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 ABI2Q9NYB9 513 aaPredicted RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 SPG21Q9NZD8 308 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 DMGDHQ9UI17 866 aaKnown RBP11.02□□□□□ -0.65
CLN3-248ENST00000636355 AP4E1Q9UPM8 1137 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 SSX2IPQ9Y2D8 614 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 NR2E1Q9Y466 385 aa11.02□□□□□ -0.65
CLN3-248ENST00000636355 TCRBV7S2A1N4TA0A589 114 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 YJEFN3A6XGL0 299 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 E7ENQ6 273 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 PIK3R2O00459 728 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 TTI1O43156 1089 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 LIASO43766 372 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 GJB5O95377 273 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 IGLV3-25P01717 112 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 ITGAVP06756 1048 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 ITGB8P26012 769 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 GRIK1P39086 918 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 PTGIRP43119 386 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 VCPP55072 806 aaKnown RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 CDH6P55285 790 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 DEFB103AP81534 67 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 GUCY2DQ02846 1103 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 CAV1Q03135 178 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 DPYSL3Q14195 570 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 KRT81Q14533 505 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 SMTNL2Q2TAL5 461 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 ARL13BQ3SXY8 428 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 EFHC2Q5JST6 749 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 SPDYCQ5MJ68 293 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 BRMS1LQ5PSV4 323 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 BEND6Q5SZJ8 279 aaPredicted RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 DUPD1Q68J44 220 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 MON1AQ86VX9 555 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 TMEM173Q86WV6 379 aaPredicted RBP11.01□□□□□ -0.65
CLN3-248ENST00000636355 CEP57Q86XR8 500 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 CCDC105Q8IYK2 499 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 ZDHHC14Q8IZN3 488 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 NUP93Q8N1F7 819 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 ZNF276Q8N554 614 aa11.01□□□□□ -0.65
CLN3-248ENST00000636355 MREGQ8N565 214 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms