RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, human

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-244	ENST00000636147	MMADHC	Q9H3L0	296 aa	Predicted RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	PNPO	Q9NVS9	261 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	DRG1	Q9Y295	367 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	NUB1	Q9Y5A7	615 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	SNED1	Q8TER0	1413 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	ARHGEF37	A1IGU5	675 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	DCAF8L1	A6NGE4	600 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	TFE3	P19532	575 aa	Predicted RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	MIP	P30301	263 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	DLG1	Q12959	904 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	DCTN2	Q13561	401 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	TDRD10	Q5VZ19	366 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	ADGRD1	Q6QNK2	874 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	TREML1	Q86YW5	311 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	SP8	Q8IXZ3	490 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	JADE3	Q92613	823 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	MKL1	Q969V6	931 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	RPF1	Q9H9Y2	349 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	RGPD5	Q99666	1765 aa		11.42	□□□□□ -0.58
CLN3-244	ENST00000636147	IGLV3-22	A0A075B6J6	115 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ATP6V1G1	O75348	118 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	CD48	P09326	243 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	MUT	P22033	750 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	GPX6	P59796	221 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	PLOD1	Q02809	727 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	EMC2	Q15006	297 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	JADE1	Q6IE81	842 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	LRRC8B	Q6P9F7	803 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	BNC2	Q6ZN30	1099 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	MAP4K3	Q8IVH8	894 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	RYBP	Q8N488	228 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	RNF149	Q8NC42	400 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	CATSPER1	Q8NEC5	780 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	OR5B17	Q8NGF7	314 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	FBXO27	Q8NI29	283 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	HDAC11	Q96DB2	347 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	DGCR14	Q96DF8	476 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	PRMT6	Q96LA8	375 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	PANX3	Q96QZ0	392 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	PAIP1	Q9H074	479 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	TASP1	Q9H6P5	420 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	GTF3C5	Q9Y5Q8	519 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	SCN11A	Q9UI33	1791 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ZC3H11A	O75152	810 aa	Known RBP eCLIP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	TMEM63A	O94886	807 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ITGAV	P06756	1048 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	NR3C2	P08235	984 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ASNS	P08243	561 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	KDELR1	P24390	212 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	EEF1D	P29692	281 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	TM4SF1	P30408	202 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	TDRP	Q86YL5	185 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	NETO2	Q8NC67	525 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	SLCO2A1	Q92959	643 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	MARK4	Q96L34	752 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	JPH1	Q9HDC5	661 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ANKEF1	Q9NU02	776 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	CDY2A	Q9Y6F7	541 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	CDY1	Q9Y6F8	540 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	RPS6KL1	Q9Y6S9	549 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	SMIM31	A0A1B0GVY4	71 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	VIL1	P09327	827 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ACTR3	P61158	418 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	SNRPF	P62306	86 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	KRT72	Q14CN4	511 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	CYGB	Q8WWM9	190 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	ZNF669	Q96BR6	464 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	VCPIP1	Q96JH7	1222 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	CCDC138	Q96M89	665 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	SSX2IP	Q9Y2D8	614 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	SPATA31A1	Q5TZJ5	1347 aa		11.41	□□□□□ -0.58
CLN3-244	ENST00000636147	MAP3K13	O43283	966 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	TYROBP	O43914	113 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	UGT1A9	O60656	530 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	MAGEC1	O60732	1142 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	RNASEH1	O60930	286 aa	Known RBP	11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	TNFAIP8	O95379	198 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	TOP3B	O95985	862 aa	Known RBP	11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	CPA3	P15088	417 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	ADSS	P30520	456 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	STX1B	P61266	288 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	KIF19	Q2TAC6	998 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	SNRNP48	Q6IEG0	339 aa	Known RBP	11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	C16orf89	Q6UX73	402 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	CYP2R1	Q6VVX0	501 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	CDKL3	Q8IVW4	592 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	TNS4	Q8IZW8	715 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	TTLL6	Q8N841	843 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	DRAXIN	Q8NBI3	349 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	JOSD2	Q8TAC2	188 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	DENND1A	Q8TEH3	1009 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	UGT1A7	Q9HAW7	530 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	UGT1A10	Q9HAW8	530 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	UGT1A8	Q9HAW9	530 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	AGO4	Q9HCK5	861 aa	Known RBP	11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	TBC1D23	Q9NUY8	699 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147	AP4B1	Q9Y6B7	739 aa		11.4	□□□□□ -0.58
CLN3-244	ENST00000636147		V9GYQ6	96 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms