RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 SIT1Q9Y3P8 196 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 FBXO21O94952 628 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 TBX18O95935 607 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 AMPD2Q01433 879 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 NR1H3Q13133 447 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 BTBD8Q5XKL5 378 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 TRIM68Q6AZZ1 485 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 RSRC2Q7L4I2 434 aaKnown RBP21.74■■□□□ 1.07
CLN3-240ENST00000631023 LUZP1Q86V48 1076 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 SLC47A2Q86VL8 602 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 RALGPS2Q86X27 583 aaPredicted RBP21.74■■□□□ 1.07
CLN3-240ENST00000631023 IRGQQ8WZA9 623 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 SPAG5Q96R06 1193 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 RTN4Q9NQC3 1192 aaKnown RBP21.74■■□□□ 1.07
CLN3-240ENST00000631023 TBC1D14Q9P2M4 693 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 SH3BP1Q9Y3L3 701 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 CEP83Q9Y592 693 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 WNT6Q9Y6F9 365 aa21.74■■□□□ 1.07
CLN3-240ENST00000631023 E2F8A0AVK6 867 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 F8VZ95 297 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 SERPINC1P01008 464 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 PNMA6AP0CW24 399 aaPredicted RBP21.73■■□□□ 1.07
CLN3-240ENST00000631023 UBXN2BQ14CS0 331 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 CPA6Q8N4T0 437 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 FAM3CQ92520 227 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 GOLGA1Q92805 767 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 OSBPL6Q9BZF3 934 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 LHX5Q9H2C1 402 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 PDCL3Q9H2J4 239 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 NLRC4Q9NPP4 1024 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 HPS4Q9NQG7 708 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 HCN4Q9Y3Q4 1203 aa21.73■■□□□ 1.07
CLN3-240ENST00000631023 NCAM2O15394 837 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 CD72P21854 359 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 RPL34P49207 117 aaKnown RBP21.72■■□□□ 1.07
CLN3-240ENST00000631023 VCPP55072 806 aaKnown RBP21.72■■□□□ 1.07
CLN3-240ENST00000631023 PJA1Q8NG27 643 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 TTC8Q8TAM2 541 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 NDRG1Q92597 394 aaKnown RBP21.72■■□□□ 1.07
CLN3-240ENST00000631023 ZFRQ96KR1 1074 aaKnown RBP21.72■■□□□ 1.07
CLN3-240ENST00000631023 NOX5Q96PH1 765 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 KLF16Q9BXK1 252 aaPredicted RBP21.72■■□□□ 1.07
CLN3-240ENST00000631023 FOXQ1Q9C009 403 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 LTB4R2Q9NPC1 389 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 OLA1Q9NTK5 396 aaKnown RBP21.72■■□□□ 1.07
CLN3-240ENST00000631023 NUDT5Q9UKK9 219 aa21.72■■□□□ 1.07
CLN3-240ENST00000631023 FAM170BA6NMN3 283 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 SPECC1L-ADORA2AF8WAN1 911 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 PIK3R2O00459 728 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 SART1O43290 800 aaKnown RBP21.71■■□□□ 1.07
CLN3-240ENST00000631023 PI15O43692 258 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 NFATC1O95644 943 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 ARSAP15289 507 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 CYP11B1P15538 503 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 NUBP1P53384 320 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 SNX16P57768 344 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 DAOAP59103 153 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 EML3Q32P44 896 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 BSPRYQ5W0U4 402 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 RNF139Q8WU17 664 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 SLC4A5Q9BY07 1137 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 MIS12Q9H081 205 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 LINC00597Q9H2U6 94 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 ECT2Q9H8V3 914 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 ABCC13Q9NSE7 274 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 LSM7Q9UK45 103 aaKnown RBP21.71■■□□□ 1.07
CLN3-240ENST00000631023 STRIP2Q9ULQ0 834 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 ATG2BQ96BY7 2078 aa21.71■■□□□ 1.07
CLN3-240ENST00000631023 YJEFN3A6XGL0 299 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 E7ENQ6 273 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 GABBR2O75899 941 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 CTHP32929 405 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 STAT1P42224 750 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 COG7P83436 770 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 BHLHA9Q7RTU4 235 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 TMEM110Q86TL2 294 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 MIB1Q86YT6 1006 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 TMEM105Q8N8V8 129 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 OTUB2Q96DC9 234 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 PRRX2Q99811 253 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 COL4A3Q01955 1670 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 CACNA1IQ9P0X4 2223 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 EPHB6O15197 1021 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 TEX33O43247 280 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 IRF1P10914 325 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 SOX5P35711 763 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 SOX9P48436 509 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 JAM2P57087 298 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 EFEMP1Q12805 493 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 PDCLQ13371 301 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 PASD1Q8IV76 773 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 SCUBE3Q8IX30 993 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 EXOC4Q96A65 974 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 MARCH2Q9P0N8 246 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 RASAL2Q9UJF2 1139 aa21.7■■□□□ 1.06
CLN3-240ENST00000631023 NDRG2Q9UN36 371 aaKnown RBP21.7■■□□□ 1.06
CLN3-240ENST00000631023 A0A1B0GTH6 734 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 MDM4O15151 490 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 GFPT2O94808 682 aa21.69■■□□□ 1.06
CLN3-240ENST00000631023 COL9A1P20849 921 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms