RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 BBS2Q9BXC9 721 aa15.57■□□□□ 0.08
PNKP-218ENST00000625299 PANK2Q9BZ23 570 aa15.57■□□□□ 0.08
PNKP-218ENST00000625299 CACNA2D2Q9NY47 1150 aa15.57■□□□□ 0.08
PNKP-218ENST00000625299 HSPBP1Q9NZL4 362 aa15.57■□□□□ 0.08
PNKP-218ENST00000625299 NXF1Q9UBU9 619 aaKnown RBP15.57■□□□□ 0.08
PNKP-218ENST00000625299 APOBEC2Q9Y235 224 aaKnown RBP15.57■□□□□ 0.08
PNKP-218ENST00000625299 RAXQ9Y2V3 346 aa15.57■□□□□ 0.08
PNKP-218ENST00000625299 ACACAQ13085 2346 aa15.57■□□□□ 0.08
PNKP-218ENST00000625299 FRMD3A2A2Y4 597 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 VPS37CA5D8V6 355 aaPredicted RBP15.56■□□□□ 0.08
PNKP-218ENST00000625299 CEBPZQ03701 1054 aaKnown RBP15.56■□□□□ 0.08
PNKP-218ENST00000625299 TRPC3Q13507 836 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 WDR45BQ5MNZ6 344 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 CCNI2Q6ZMN8 369 aaPredicted RBP15.56■□□□□ 0.08
PNKP-218ENST00000625299 CCDC73Q6ZRK6 1079 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 TOGARAM2Q6ZUX3 1019 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 STXBP4Q6ZWJ1 553 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 FAM35AQ86V20 835 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 ZCCHC9Q8N567 271 aaKnown RBP15.56■□□□□ 0.08
PNKP-218ENST00000625299 FOXJ1Q92949 421 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 HPS3Q969F9 1004 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 ZNF419Q96HQ0 510 aaPredicted RBP15.56■□□□□ 0.08
PNKP-218ENST00000625299 XPO6Q96QU8 1125 aaKnown RBP15.56■□□□□ 0.08
PNKP-218ENST00000625299 MIR1-1HGQ9H1L0 117 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 FBXO2Q9UK22 296 aaPredicted RBP15.56■□□□□ 0.08
PNKP-218ENST00000625299 STARD13Q9Y3M8 1113 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 ATP8B3O60423 1300 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 MYH10P35580 1976 aa15.56■□□□□ 0.08
PNKP-218ENST00000625299 IGSF10Q6WRI0 2623 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 APC2O95996 2303 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 PTPRBP23467 1997 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 EIF4E1BA6NMX2 242 aaKnown RBP15.55■□□□□ 0.08
PNKP-218ENST00000625299 PRRT4C9JH25 899 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 CD2BP2O95400 341 aaKnown RBP15.55■□□□□ 0.08
PNKP-218ENST00000625299 TYRP14679 529 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 TUBP50607 506 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 SNRNP35Q16560 246 aaKnown RBP15.55■□□□□ 0.08
PNKP-218ENST00000625299 CCDC65Q8IXS2 484 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 BHMTQ93088 406 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 LRIG1Q96JA1 1093 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 MRGPRX1Q96LB2 322 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 CGRRF1Q99675 332 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 GABRG3Q99928 467 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 TRIM9Q9C026 710 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 SMYD3Q9H7B4 428 aa15.55■□□□□ 0.08
PNKP-218ENST00000625299 DMAP1Q9NPF5 467 aaPredicted RBP15.55■□□□□ 0.08
PNKP-218ENST00000625299 GCN1Q92616 2671 aaKnown RBP15.55■□□□□ 0.08
PNKP-218ENST00000625299 GOLGA8CPA6NN73 597 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 WASH3PC4AMC7 463 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 TLR5O60602 858 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 CD6P30203 668 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 CYP2J2P51589 502 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 MYL6P60660 151 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 SCARA5Q6ZMJ2 495 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 SLCO6A1Q86UG4 719 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 KIAA1586Q9HCI6 787 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 CD248Q9HCU0 757 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 KRT82Q9NSB4 513 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 PCOLCE2Q9UKZ9 415 aa15.54■□□□□ 0.08
PNKP-218ENST00000625299 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.54■□□□□ 0.08
PNKP-218ENST00000625299 SRPRBQ9Y5M8 271 aaKnown RBP15.54■□□□□ 0.08
PNKP-218ENST00000625299 A0A1B0GTW7 788 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 CACNG3O60359 315 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 PHACTR2O75167 634 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 AP1G2O75843 785 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 TBX18O95935 607 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 DGKGP49619 791 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 PGFP49763 221 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 CDH8P55286 799 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 STARD3Q14849 445 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 SNX30Q5VWJ9 437 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 PDILTQ8N807 584 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 SMARCD1Q96GM5 515 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 TOE1Q96GM8 510 aaKnown RBP15.53■□□□□ 0.08
PNKP-218ENST00000625299 GPR174Q9BXC1 333 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 ZDHHC5Q9C0B5 715 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 IL21RQ9HBE5 538 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 PLK2Q9NYY3 685 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 WDR35Q9P2L0 1181 aa15.53■□□□□ 0.08
PNKP-218ENST00000625299 LSM7Q9UK45 103 aaKnown RBP15.53■□□□□ 0.08
PNKP-218ENST00000625299 A0A087X0B3 334 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 CLIC2O15247 247 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 CBFA2T3O75081 653 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 ZIC2O95409 532 aaPredicted RBP15.52■□□□□ 0.08
PNKP-218ENST00000625299 FAM163BP0C2L3 166 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 ZDHHC11BP0C7U3 371 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 NCAM1P13591 858 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 CYP24A1Q07973 514 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 GOLGA8FQ08AF8 430 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 GOLGA8DPQ0D2H9 430 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 PSMD6Q15008 389 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 PAQR9Q6ZVX9 377 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 HTR3DQ70Z44 454 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 CACUL1Q86Y37 369 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 MARCH9Q86YJ5 346 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 SYAP1Q96A49 352 aaPredicted RBP15.52■□□□□ 0.08
PNKP-218ENST00000625299 ELMO3Q96BJ8 720 aa15.52■□□□□ 0.08
PNKP-218ENST00000625299 BBC3Q96PG8 261 aaPredicted RBP15.52■□□□□ 0.08
PNKP-218ENST00000625299 DUSP9Q99956 384 aaKnown RBP15.52■□□□□ 0.08
PNKP-218ENST00000625299 GAREM1Q9H706 876 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms