RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 CCL23P55773 120 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 TGM3Q08188 693 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 GALNTL6Q49A17 601 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 TC2NQ8N9U0 490 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 ELOVL4Q9GZR5 314 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 IL17RBQ9NRM6 502 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 RPS6KB2Q9UBS0 482 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 ADAM21Q9UKJ8 722 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 KIF20BQ96Q89 1820 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 UMODL1Q5DID0 1318 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 SLC15A5A6NIM6 579 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 CYP2F1P24903 491 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 MAPK1P28482 360 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 SKOR1P84550 965 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 OTUD4Q01804 1114 aaKnown RBP11.74□□□□□ -0.53
CLIP1-219ENST00000620786 GJC2Q5T442 439 aaPredicted RBP11.74□□□□□ -0.53
CLIP1-219ENST00000620786 ERMARDQ5T6L9 678 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 ANKS1AQ92625 1134 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 ARL2BPQ9Y2Y0 163 aa11.74□□□□□ -0.53
CLIP1-219ENST00000620786 PSMD12O00232 456 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 RAMP2O60895 175 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 NDUFS2O75306 463 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SUPT7LO94864 414 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 PGK1P00558 417 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 POLR2EP19388 210 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 PSMC6P62333 389 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 ALDH6A1Q02252 535 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 LAYNQ6UX15 382 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 MTSS1LQ765P7 747 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CATSPER1Q8NEC5 780 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 OR2W6PQ8NHA6 318 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SLC5A5Q92911 643 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 E2F7Q96AV8 911 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SERPINB11Q96P15 392 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 ERP44Q9BS26 406 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 A1CFQ9NQ94 594 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 APPL1Q9UKG1 709 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 TRIM49D1C9J1S8 452 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 IGSF6O95976 241 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 IMPDH2P12268 514 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 HPGDP15428 266 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 TCN1P20061 433 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 PGS1Q32NB8 556 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 C16orf87Q6PH81 154 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 FAR2Q96K12 515 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SEMA6BQ9H3T3 888 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 KLHL2O95198 593 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 STAU1O95793 577 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 PLEKP08567 350 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 HIRAP54198 1017 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 NOGQ13253 232 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CELF3Q5SZQ8 465 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 FKBP1CQ5VVH2 108 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 DOK6Q6PKX4 331 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SPOCD1Q6ZMY3 1216 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 GPR142Q7Z601 462 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 RNF168Q8IYW5 571 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 ARMC2Q8NEN0 867 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 PPP1R13LQ8WUF5 828 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 LRRC40Q9H9A6 602 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 TDRKHQ9Y2W6 561 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CARNS1A5YM72 827 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 TMEM150BA6NC51 233 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 PDZK1P1A8MUH7 402 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 RBAK-RBAKDNI3L0D1 243 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 IRF6O14896 467 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SMIM10L2AP0DMW4 78 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SMIM10L2BP0DMW5 78 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CYP2A6P11509 494 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CCDC130P13994 396 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 ERFP50548 548 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 TUBP50607 506 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 MRPS6P82932 125 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CCDC149Q6ZUS6 474 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 RGL4Q8IZJ4 473 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 RIBC1Q8N443 379 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CYP2W1Q8TAV3 490 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 ATG4AQ8WYN0 398 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SERAC1Q96JX3 654 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 NLNQ9BYT8 704 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 MANSC1Q9H8J5 431 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 KRCC1Q9NPI7 259 aaPredicted RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 UBP1Q9NZI7 540 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 V9GYQ6 96 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 MROH7Q68CQ1 1323 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 FAM86B1E9PN63 330 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 GOLGA8TH3BQL2 631 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 FAM86B2P0C5J1 330 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 TNNI3P19429 210 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 KRT20P35900 424 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 MLH1P40692 756 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 CREMQ03060 361 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 MMGT1Q8N4V1 131 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 MED8Q96G25 268 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 SGSM3Q96HU1 749 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 APBA2Q99767 749 aa11.73□□□□□ -0.53
CLIP1-219ENST00000620786 UTP6Q9NYH9 597 aaKnown RBP11.73□□□□□ -0.53
CLIP1-219ENST00000620786 PDHA1P08559 390 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 PRKAA1Q13131 559 aa11.72□□□□□ -0.53
CLIP1-219ENST00000620786 MARC1Q5VT66 337 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms