RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ZBP1Q9H171 429 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 KRIT1O00522 736 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 KRT1P04264 644 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 URODP06132 367 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 ATF6P18850 670 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 ARSEP51690 589 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 TUBB4BP68371 445 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 CLUL1Q15846 466 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 MGAT5BQ3V5L5 792 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 ADAT2Q7Z6V5 191 aaKnown RBP14.9□□□□□ -0.02
USP39-220ENST00000613444 ZNF461Q8TAF7 563 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 GPR152Q8TDT2 470 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 NAP1L3Q99457 506 aaPredicted RBP14.9□□□□□ -0.02
USP39-220ENST00000613444 NCAPGQ9BPX3 1015 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 PLVAPQ9BX97 442 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 ANKZF1Q9H8Y5 726 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 AFF4Q9UHB7 1163 aaKnown RBP14.9□□□□□ -0.02
USP39-220ENST00000613444 SCML2Q9UQR0 700 aa14.9□□□□□ -0.02
USP39-220ENST00000613444 SEC24AO95486 1093 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 RALAP11233 206 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 PTPN7P35236 360 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 CDKN2BP42772 138 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 SULT1E1P49888 294 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 ADCY2Q08462 1091 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 RAB33AQ14088 237 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 PRELID2Q8N945 189 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 RBM41Q96IZ5 413 aaKnown RBP14.89□□□□□ -0.03
USP39-220ENST00000613444 SEPT5Q99719 369 aaPredicted RBP14.89□□□□□ -0.03
USP39-220ENST00000613444 OSBPL8Q9BZF1 889 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 NMUR1Q9HB89 426 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 STK39Q9UEW8 545 aa14.89□□□□□ -0.03
USP39-220ENST00000613444 LINC01553A4QN01 128 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 CCDC188H7C350 402 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 PRPSAP2O60256 369 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 ARHGEF15O94989 841 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 CD48P09326 243 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 CTSAP10619 480 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 NCAM1P13591 858 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 ATF2P15336 505 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 KDELR1P24390 212 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 DNAJB2P25686 324 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 BMPR1AP36894 532 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 COPS2P61201 443 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 KRT17Q04695 432 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 IFRD2Q12894 506 aaPredicted RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 TPGS2Q68CL5 300 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 SPOCD1Q6ZMY3 1216 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 TEKT4Q8WW24 435 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 EDEM1Q92611 657 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 PGAP3Q96FM1 320 aaPredicted RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 MTIF3Q9H2K0 278 aaKnown RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 RXFP1Q9HBX9 757 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 FNIP2Q9P278 1114 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 HSFX1Q9UBD0 423 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 STAP1Q9ULZ2 295 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 hCG_1818297A0A087WSY0 165 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 LRRD1A4D1F6 860 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 YWHAGP61981 247 aaKnown RBP eCLIP14.88□□□□□ -0.03
USP39-220ENST00000613444 EIF4EBP2Q13542 120 aaPredicted RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 MTMR3Q13615 1198 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 SMC1AQ14683 1233 aaKnown RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 PPP2R5EQ16537 467 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 CYP1B1Q16678 543 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 BOLA3Q53S33 107 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 FAM109BQ6ICB4 259 aaPredicted RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 SCYL2Q6P3W7 929 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 DENND5BQ6ZUT9 1274 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 SPRED2Q7Z698 418 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 CCDC50Q8IVM0 306 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 FAM71BQ8TC56 605 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 LRRC1Q9BTT6 524 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 SNRNP25Q9BV90 132 aaKnown RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 FBXO44Q9H4M3 255 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 WDR6Q9NNW5 1121 aaKnown RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 MRPL17Q9NRX2 175 aaKnown RBP14.88□□□□□ -0.03
USP39-220ENST00000613444 PIGVQ9NUD9 493 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 OSER1Q9NX31 292 aa14.88□□□□□ -0.03
USP39-220ENST00000613444 M0QYT0 321 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 CAPN9O14815 690 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 MDM4O15151 490 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 TEX28O15482 410 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 IGLV3-25P01717 112 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 KRT10P13645 584 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 MAGEA10P43363 369 aaPredicted RBP14.87□□□□□ -0.03
USP39-220ENST00000613444 CA9Q16790 459 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 TFDP3Q5H9I0 405 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 GPR161Q8N6U8 529 aaKnown RBP14.87□□□□□ -0.03
USP39-220ENST00000613444 CCDC185Q8N715 623 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 HDAC7Q8WUI4 952 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 HSPH1Q92598 858 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 CEP295NLQ96MC4 621 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 KRT12Q99456 494 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 HEMGNQ9BXL5 484 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 DDX47Q9H0S4 455 aaKnown RBP14.87□□□□□ -0.03
USP39-220ENST00000613444 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.87□□□□□ -0.03
USP39-220ENST00000613444 RRN3Q9NYV6 651 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 MYO7AQ13402 2215 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 MTCL1Q9Y4B5 1905 aaKnown RBP14.87□□□□□ -0.03
USP39-220ENST00000613444 RHOXF2BP0C7M4 288 aa14.87□□□□□ -0.03
USP39-220ENST00000613444 MYOGP15173 224 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms