RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 NRP1O14786 923 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 WDR46O15213 610 aaKnown RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 TBC1D4O60343 1298 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 KCNK5O95279 499 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 LINC00271P0C7V0 271 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 COPB2P35606 906 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 TMPOP42166 694 aaKnown RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 TECP42680 631 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 CLK3P49761 638 aaKnown RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 PLCD1P51178 756 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 MECOMQ03112 1051 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 CSTF1Q05048 431 aaKnown RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 SRSF1Q07955 248 aaKnown RBP eCLIP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 SPTAN1Q13813 2472 aaKnown RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 FAM214AQ32MH5 1076 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 KIAA1755Q5JYT7 1200 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 ANKRD54Q6NXT1 300 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 NFRKBQ6P4R8 1299 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 G2E3Q7L622 706 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 RD3Q7Z3Z2 195 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 BRAPQ7Z569 592 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 SPICE1Q8N0Z3 855 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 MAGEB6Q8N7X4 407 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 FAM133AQ8N9E0 248 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 GLB1L3Q8NCI6 653 aaPredicted RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 DBF4BQ8NFT6 615 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 LINS1Q8NG48 757 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 ATP8B4Q8TF62 1192 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 MAP4K1Q92918 833 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 TOP1MTQ969P6 601 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 IL17RAQ96F46 866 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 IFIH1Q9BYX4 1025 aaKnown RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 INO80BQ9C086 356 aaPredicted RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 PCIF1Q9H4Z3 704 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 PIEZO2Q9H5I5 2752 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 GPR108Q9NPR9 543 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 PDGFCQ9NRA1 345 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 SEMA4GQ9NTN9 838 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 SAP30BPQ9UHR5 308 aaKnown RBP5.1□□□□□ -1.59
LINC00540-201ENST00000611481 CA14Q9ULX7 337 aa5.1□□□□□ -1.59
LINC00540-201ENST00000611481 A0A1W2PRG0 241 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 DVL2O14641 736 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 C1QL1O75973 258 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 FSBPO95073 299 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 HLA-DOAP06340 250 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 CENPBP07199 599 aaPredicted RBP5.09□□□□□ -1.59
LINC00540-201ENST00000611481 SRGAP2BP0DMP2 458 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 CKBP12277 381 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 PHKA1P46020 1223 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 AVPR1BP47901 424 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 MECP2P51608 486 aaKnown RBP5.09□□□□□ -1.59
LINC00540-201ENST00000611481 OS9Q13438 667 aaPredicted RBP5.09□□□□□ -1.59
LINC00540-201ENST00000611481 TDGQ13569 410 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 ABCB5Q2M3G0 1257 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 ZNF528Q3MIS6 628 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 FGD2Q7Z6J4 655 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 DDX53Q86TM3 631 aaKnown RBP5.09□□□□□ -1.59
LINC00540-201ENST00000611481 SYNPOQ8N3V7 929 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 LCORLQ8N3X6 602 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 C8orf58Q8NAV2 365 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 KLHDC4Q8TBB5 520 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 SPPL3Q8TCT6 385 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 ZNF384Q8TF68 577 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 TGFBRAP1Q8WUH2 860 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 POF1BQ8WVV4 589 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 DNAAF4Q8WXU2 420 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 LPIN2Q92539 896 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 CTAGE1Q96RT6 745 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 SCNM1Q9BWG6 230 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 MRPL4Q9BYD3 311 aaKnown RBP5.09□□□□□ -1.59
LINC00540-201ENST00000611481 WDR11Q9BZH6 1224 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 CABP5Q9NP86 173 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 RXFP3Q9NSD7 469 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 ZSCAN32Q9NX65 697 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 DLGAP2Q9P1A6 1054 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 RAB23Q9ULC3 237 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 DUSP12Q9UNI6 340 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 Q9Y3F1 56 aa5.09□□□□□ -1.59
LINC00540-201ENST00000611481 DDX49Q9Y6V7 483 aaKnown RBP5.09□□□□□ -1.59
LINC00540-201ENST00000611481 DMXL2Q8TDJ6 3036 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 FLT1P17948 1338 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 SCN10AQ9Y5Y9 1956 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 TICRRQ7Z2Z1 1910 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 A0A0A6YYJ9 748 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 CCDC163A0A0D9SF12 145 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 TMEM200CA6NKL6 621 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 J3QKU1 62 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 VWA5AO00534 786 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 LDHCP07864 332 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 RETP07949 1114 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 MMP3P08254 477 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 WEE2P0C1S8 567 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 GLULP15104 373 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 GUCY1A2P33402 732 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 SQSTM1Q13501 440 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 MYBPC3Q14896 1274 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 SEPT2Q15019 361 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 EPHA7Q15375 998 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 TCEA2Q15560 299 aa5.08□□□□□ -1.6
LINC00540-201ENST00000611481 CERKLQ49MI3 558 aaPredicted RBP5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms