RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 HSFY1Q96LI6 401 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 NAA15Q9BXJ9 866 aaKnown RBP17.7■□□□□ 0.42
TRIM28-215ENST00000601150 CNGB3Q9NQW8 809 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 DNMT3LQ9UJW3 386 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 NDRG2Q9UN36 371 aaKnown RBP17.7■□□□□ 0.42
TRIM28-215ENST00000601150 ARIH1Q9Y4X5 557 aaPredicted RBP17.7■□□□□ 0.42
TRIM28-215ENST00000601150 F5P12259 2224 aa17.7■□□□□ 0.42
TRIM28-215ENST00000601150 NFATC1O95644 943 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 PNMA6AP0CW24 399 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-215ENST00000601150 LCP1P13796 627 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 GPD2P43304 727 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 BPIFB4P59827 614 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 AMPD2Q01433 879 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 GOLGA8FQ08AF8 430 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 GOLGA8DPQ0D2H9 430 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 NR1H3Q13133 447 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 BHLHA9Q7RTU4 235 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 DTWD2Q8NBA8 298 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 NDRG1Q92597 394 aaKnown RBP17.69■□□□□ 0.42
TRIM28-215ENST00000601150 KLF16Q9BXK1 252 aaPredicted RBP17.69■□□□□ 0.42
TRIM28-215ENST00000601150 LINC00597Q9H2U6 94 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 ECT2Q9H8V3 914 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 DLGAP2Q9P1A6 1054 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 TBC1D14Q9P2M4 693 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 NUDT5Q9UKK9 219 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 SH3BP1Q9Y3L3 701 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 DAAM1Q9Y4D1 1078 aa17.69■□□□□ 0.42
TRIM28-215ENST00000601150 OTOL1A6NHN0 477 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-215ENST00000601150 GALR2O43603 387 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-215ENST00000601150 GABBR2O75899 941 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 IRF1P10914 325 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 ATP1A3P13637 1013 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 CLCN1P35523 988 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 MAGEA9P43362 315 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 ACADSBP45954 432 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 KLK7P49862 253 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 DAOAP59103 153 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 UBXN1Q04323 297 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 SYCP1Q15431 976 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 BTBD8Q5XKL5 378 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 TXNDC11Q6PKC3 985 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 RSRC2Q7L4I2 434 aaKnown RBP17.68■□□□□ 0.42
TRIM28-215ENST00000601150 APTXQ7Z2E3 356 aaKnown RBP17.68■□□□□ 0.42
TRIM28-215ENST00000601150 ZNF687Q8N1G0 1237 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 STK32AQ8WU08 396 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 IRGQQ8WZA9 623 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 CLDN23Q96B33 292 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 PCMTD1Q96MG8 357 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-215ENST00000601150 STK33Q9BYT3 514 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 GANQ9H2C0 597 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 FAM207AQ9NSI2 230 aaPredicted RBP17.68■□□□□ 0.42
TRIM28-215ENST00000601150 SIK3Q9Y2K2 1263 aa17.68■□□□□ 0.42
TRIM28-215ENST00000601150 PIK3R2O00459 728 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 SCAMP3O14828 347 aaKnown RBP17.67■□□□□ 0.42
TRIM28-215ENST00000601150 MDM4O15151 490 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 FBXO21O94952 628 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 RPS9P46781 194 aaKnown RBP17.67■□□□□ 0.42
TRIM28-215ENST00000601150 RPL34P49207 117 aaKnown RBP17.67■□□□□ 0.42
TRIM28-215ENST00000601150 IQCB1Q15051 598 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 ZSCAN23Q3MJ62 389 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 BSPRYQ5W0U4 402 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 SLC47A2Q86VL8 602 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 MIB1Q86YT6 1006 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 PRSS33Q8NF86 280 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 OTUB2Q96DC9 234 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 ST7Q9NRC1 585 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 OLA1Q9NTK5 396 aaKnown RBP17.67■□□□□ 0.42
TRIM28-215ENST00000601150 RASAL2Q9UJF2 1139 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 LSM7Q9UK45 103 aaKnown RBP17.67■□□□□ 0.42
TRIM28-215ENST00000601150 STRIP2Q9ULQ0 834 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 PCDHGC3Q9UN70 934 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 MYOFQ9NZM1 2061 aa17.67■□□□□ 0.42
TRIM28-215ENST00000601150 YJEFN3A6XGL0 299 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 E7ENQ6 273 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 F8VZ95 297 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 CAVIN2O95810 425 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 GJA4P35212 333 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 KRT9P35527 623 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 POLR2FP61218 127 aaKnown RBP17.66■□□□□ 0.42
TRIM28-215ENST00000601150 EFEMP1Q12805 493 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 FZD5Q13467 585 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 LRRC32Q14392 662 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 PON2Q15165 354 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 HTR3DQ70Z44 454 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 ADGRG2Q8IZP9 1017 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 NEK11Q8NG66 645 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 RNF139Q8WU17 664 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 WBP2Q969T9 261 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 EXOC4Q96A65 974 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 ERGIC2Q96RQ1 377 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 SLC4A5Q9BY07 1137 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 MIS12Q9H081 205 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 LMAN1LQ9HAT1 526 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 ABCC13Q9NSE7 274 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 MARCH2Q9P0N8 246 aa17.66■□□□□ 0.42
TRIM28-215ENST00000601150 MUC6Q6W4X9 2439 aa17.65■□□□□ 0.42
TRIM28-215ENST00000601150 SART1O43290 800 aaKnown RBP17.65■□□□□ 0.42
TRIM28-215ENST00000601150 CYP17A1P05093 508 aa17.65■□□□□ 0.42
TRIM28-215ENST00000601150 CHRNB1P11230 501 aa17.65■□□□□ 0.42
TRIM28-215ENST00000601150 PTPN5P54829 565 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms