RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TBC1D3BA6NDS4 549 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 TMEM114B3SHH9 223 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 RXRGP48443 463 aa21.1■□□□□ 0.97
UPF1-207ENST00000599848 S100A5P33763 92 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 C2orf49Q9BVC5 232 aaPredicted RBP21.09■□□□□ 0.97
UPF1-207ENST00000599848 RAD21L1Q9H4I0 556 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 MRPS23Q9Y3D9 190 aaKnown RBP21.09■□□□□ 0.97
UPF1-207ENST00000599848 A0A1B0GTH6 734 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 PRR23D1E9PI22 279 aaPredicted RBP21.09■□□□□ 0.97
UPF1-207ENST00000599848 NCK2O43639 380 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 PRR23D2P0DMB1 279 aaPredicted RBP21.09■□□□□ 0.97
UPF1-207ENST00000599848 SERPINA4P29622 427 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 PBLDP30039 288 aaPredicted RBP21.09■□□□□ 0.97
UPF1-207ENST00000599848 ICE2Q659A1 982 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 CAPN10Q9HC96 672 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 MIEF1Q9NQG6 463 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 SOX13Q9UN79 622 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 AP4E1Q9UPM8 1137 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 WDR47O94967 919 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 DDX39BQ13838 428 aaKnown RBP21.09■□□□□ 0.97
UPF1-207ENST00000599848 ALG11Q2TAA5 492 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 FBXL19Q6PCT2 694 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 C16orf87Q6PH81 154 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 ZNF614Q8N883 585 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 ELOVL6Q9H5J4 265 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 SNCAIPQ9Y6H5 919 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 CNPP09543 421 aaKnown RBP21.09■□□□□ 0.97
UPF1-207ENST00000599848 COMTP21964 271 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 HTR1BP28222 390 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 SLC22A9Q8IVM8 553 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 ARL2BPQ9Y2Y0 163 aa21.09■□□□□ 0.97
UPF1-207ENST00000599848 GZMAP12544 262 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 USP45Q70EL2 814 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 UBE2E3Q969T4 207 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 PPP1R14AQ96A00 147 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 CCDC134Q9H6E4 229 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 CSH1P0DML2 217 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 CSH2P0DML3 217 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 MAGEA4P43358 317 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 BCL2L1Q07817 233 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 RIOX2Q8IUF8 465 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 SPATA4Q8NEY3 305 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 CXorf40AQ8TE69 158 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 FAM172AQ8WUF8 416 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 EPB41L4AQ9HCS5 686 aaPredicted RBP21.08■□□□□ 0.97
UPF1-207ENST00000599848 AMACRQ9UHK6 382 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 TRHDEQ9UKU6 1024 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 TMEM88BA6NKF7 163 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 MYO1CO00159 1063 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 NDUFV1P49821 464 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 CCDC85BQ15834 202 aaPredicted RBP21.08■□□□□ 0.97
UPF1-207ENST00000599848 AGR3Q8TD06 166 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 VMP1Q96GC9 406 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 VTI1BQ9UEU0 232 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 ZNF510Q9Y2H8 683 aa21.08■□□□□ 0.97
UPF1-207ENST00000599848 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.08■□□□□ 0.96
UPF1-207ENST00000599848 ACKR2O00590 384 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 TM9SF1O15321 606 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 PLA2G6O60733 806 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 ACOX1Q15067 660 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 PGM5Q15124 567 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 WLSQ5T9L3 541 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 C3orf62Q6ZUJ4 267 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 GFM2Q969S9 779 aaKnown RBP21.08■□□□□ 0.96
UPF1-207ENST00000599848 TINF2Q9BSI4 451 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 IDI2Q9BXS1 227 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 ILKAPQ9H0C8 392 aaPredicted RBP21.08■□□□□ 0.96
UPF1-207ENST00000599848 KRT84Q9NSB2 600 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 CXCR2P25025 360 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 WEE1P30291 646 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 CYP4Z2PQ8N1L4 340 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 STK40Q8N2I9 435 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 CTNNAL1Q9UBT7 734 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 RRP15Q9Y3B9 282 aaKnown RBP21.08■□□□□ 0.96
UPF1-207ENST00000599848 RPS6KL1Q9Y6S9 549 aa21.08■□□□□ 0.96
UPF1-207ENST00000599848 LRRC14BA6NHZ5 514 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 ZNF286BP0CG31 522 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 PGM1P36871 562 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 MRIQ9BWK5 157 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 RTFDC1Q9BY42 306 aaPredicted RBP21.07■□□□□ 0.96
UPF1-207ENST00000599848 RGS18Q9NS28 235 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 IMPAD1Q9NX62 359 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 CDC42BPBQ9Y5S2 1711 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 CA12O43570 354 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 GCATO75600 419 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 KELP23276 732 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 XRCC4Q13426 336 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 WNK4Q96J92 1243 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 SLC28A3Q9HAS3 691 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 CLCN6P51797 869 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 MAP2K5Q13163 448 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 PKN2Q16513 984 aaKnown RBP21.07■□□□□ 0.96
UPF1-207ENST00000599848 KLHL35Q6PF15 583 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 SPATA21Q7Z572 469 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 STARD13Q9Y3M8 1113 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 NRXN1Q9ULB1 1477 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 GNG14A0A1W2PPG7 69 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 AKAP10O43572 662 aa21.07■□□□□ 0.96
UPF1-207ENST00000599848 CSE1LP55060 971 aaKnown RBP21.07■□□□□ 0.96
UPF1-207ENST00000599848 SMARCB1Q12824 385 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms