RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 NOTCH4Q99466 2003 aa17.36■□□□□ 0.37
SHKBP1-219ENST00000599575 A0A0C4DFX4 3053 aa17.36■□□□□ 0.37
SHKBP1-219ENST00000599575 C2orf78A6NCI8 922 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 COCHO43405 550 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 HSF2BPO75031 334 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 ADCY5O95622 1261 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 FCARP24071 287 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 COG7P83436 770 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 SLC6A3Q01959 620 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 ACAD10Q6JQN1 1059 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 RSRC2Q7L4I2 434 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 ZNF571Q7Z3V5 609 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 MFSD6LQ8IWD5 586 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 ARL14EPQ8N8R7 260 aaPredicted RBP17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 CPA5Q8WXQ8 436 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 PCDHB18PQ96TA0 734 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 SEPT11Q9NVA2 429 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 THG1LQ9NWX6 298 aaKnown RBP17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 RRN3Q9NYV6 651 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 NUMBLQ9Y6R0 609 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 GREB1Q4ZG55 1949 aa17.35■□□□□ 0.37
SHKBP1-219ENST00000599575 NRG2O14511 850 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 PSMC3P17980 439 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 FCHO2Q0JRZ9 810 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 MAPK8IP2Q13387 824 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 TDGQ13569 410 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 C10orf120Q5SQS8 335 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 MSANTD2Q6P1R3 559 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 PARM1Q6UWI2 310 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 OLFML1Q6UWY5 402 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 UBALD2Q8IYN6 164 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 SLC30A5Q8TAD4 765 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 FGF14Q92915 247 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 USP13Q92995 863 aaPredicted RBP17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 TRIM11Q96F44 468 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 PANX2Q96RD6 677 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 RNF38Q9H0F5 515 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 CCSER2Q9H7U1 834 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 GRPEL1Q9HAV7 217 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 OSER1Q9NX31 292 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 ADAM22Q9P0K1 906 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 SORCS3Q9UPU3 1222 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 BDP1A6H8Y1 2624 aa17.34■□□□□ 0.37
SHKBP1-219ENST00000599575 CAPN9O14815 690 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 RTN2O75298 545 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 ERBB2P04626 1255 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 MYBL1P10243 752 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 MBL2P11226 248 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 SP100P23497 879 aaPredicted RBP17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 MTA1Q13330 715 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 NNTQ13423 1086 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 ARHGAP29Q52LW3 1261 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 TANGO2Q6ICL3 276 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 OR6B2Q6IFH4 312 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 WDR59Q6PJI9 974 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 POTEHQ6S545 545 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 XYLT1Q86Y38 959 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 RNF135Q8IUD6 432 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 SLC44A3Q8N4M1 653 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 BPIFB1Q8TDL5 484 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 FAM149B1Q96BN6 582 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 SLC22A12Q96S37 553 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 CYP2S1Q96SQ9 504 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 TRPV5Q9NQA5 729 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 ARHGAP20Q9P2F6 1191 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 ADAMTS1Q9UHI8 967 aa17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 HBS1LQ9Y450 684 aaKnown RBP17.33■□□□□ 0.36
SHKBP1-219ENST00000599575 E2F8A0AVK6 867 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 HEPACAM2A8MVW5 462 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 DDX3XO00571 662 aaKnown RBP eCLIP17.32■□□□□ 0.365e-8■■■■■ 77.1
SHKBP1-219ENST00000599575 SLC9A3R1O14745 358 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 PRAMEF12O95522 483 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 SKILP12757 684 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 PGFP49763 221 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 MRE11P49959 708 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 ADKP55263 362 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 PFKPQ01813 784 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 CC2D1AQ6P1N0 951 aaPredicted RBP17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 FAM183BPQ6ZVS7 135 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 MON1BQ7L1V2 547 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 YAF2Q8IY57 180 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 TC2NQ8N9U0 490 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 C3orf20Q8ND61 904 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 OLIG1Q8TAK6 271 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 IRF7Q92985 503 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 OTUB2Q96DC9 234 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 SLC2A13Q96QE2 648 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 TRMT61BQ9BVS5 477 aaKnown RBP17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 DCLK3Q9C098 648 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 ISCUQ9H1K1 167 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 MARCH2Q9P0N8 246 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 CPQQ9Y646 472 aa17.32■□□□□ 0.36
SHKBP1-219ENST00000599575 PIK3R2O00459 728 aa17.31■□□□□ 0.36
SHKBP1-219ENST00000599575 CHADO15335 359 aa17.31■□□□□ 0.36
SHKBP1-219ENST00000599575 SRFP11831 508 aa17.31■□□□□ 0.36
SHKBP1-219ENST00000599575 NCAM1P13591 858 aa17.31■□□□□ 0.36
SHKBP1-219ENST00000599575 NOS2P35228 1153 aa17.31■□□□□ 0.36
SHKBP1-219ENST00000599575 VIPR2P41587 438 aa17.31■□□□□ 0.36
SHKBP1-219ENST00000599575 RING1Q06587 406 aa17.31■□□□□ 0.36
SHKBP1-219ENST00000599575 PTP4A2Q12974 167 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms