RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 NEDD8-MDP1E9PL57 170 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 TULP3O75386 442 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 CAVIN2O95810 425 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 RALAP11233 206 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 PSEN1P49768 467 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 SLC8A3P57103 927 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 MESP2Q0VG99 397 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 PNOCQ13519 176 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 BECN1Q14457 450 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 ZCWPW2Q504Y3 356 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 DCAF17Q5H9S7 520 aaPredicted RBP10.33□□□□□ -0.76
VRK3-216ENST00000599342 PLA2G2CQ5R387 149 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 C10orf120Q5SQS8 335 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 C10orf76Q5T2E6 689 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 TCERG1LQ5VWI1 586 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 PMS2CLQ68D20 193 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 TMEM92Q6UXU6 159 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 HTR3DQ70Z44 454 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 SFTPA1Q8IWL2 248 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 ETFBKMTQ8IXQ9 262 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 SMYD4Q8IYR2 804 aaPredicted RBP10.33□□□□□ -0.76
VRK3-216ENST00000599342 PGBD3Q8N328 593 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 ZNF513Q8N8E2 541 aaPredicted RBP10.33□□□□□ -0.76
VRK3-216ENST00000599342 FBXL13Q8NEE6 735 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 EEF2KMTQ96G04 330 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 FAXDC2Q96IV6 333 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 HEXIM2Q96MH2 286 aaKnown RBP10.33□□□□□ -0.76
VRK3-216ENST00000599342 XPO6Q96QU8 1125 aaKnown RBP10.33□□□□□ -0.76
VRK3-216ENST00000599342 CDK5RAP1Q96SZ6 601 aaKnown RBP10.33□□□□□ -0.76
VRK3-216ENST00000599342 BBS2Q9BXC9 721 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 SMOC1Q9H4F8 434 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 RAB20Q9NX57 234 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 DNMT3LQ9UJW3 386 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 NAGPAQ9UK23 515 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 GTF3C3Q9Y5Q9 886 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 ATG2BQ96BY7 2078 aa10.33□□□□□ -0.76
VRK3-216ENST00000599342 SPTBN4Q9H254 2564 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 ZNF292O60281 2723 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 A0A0A0MRY4 1105 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 A0A1W2PQH9 124 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 TCRBV21S2A2A0A5A6 115 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 BCLAF3A2AJT9 711 aaKnown RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 ANTXRLA6NF34 631 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 SGK1O00141 431 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 ZBTB24O43167 697 aaPredicted RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 SMC2O95347 1197 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 TBX18O95935 607 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 ADRB1P08588 477 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 RARGP13631 454 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 KIR2DL1P43626 348 aaPredicted RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 PLA2G4AP47712 749 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 PGFP49763 221 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 KIF11P52732 1056 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 BYSLQ13895 437 aaKnown RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 PPP1R26Q5T8A7 1209 aaPredicted RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 STPG1Q5TH74 334 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 ZNF658Q5TYW1 1059 aaPredicted RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 EMC10Q5UCC4 262 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 RNF43Q68DV7 783 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 GRAMD4Q6IC98 578 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 KLHDC10Q6PID8 442 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 TPGS1Q6ZTW0 290 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 CCDC186Q7Z3E2 898 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 CYP2U1Q7Z449 544 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 TMEM25Q86YD3 366 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 PHTF2Q8N3S3 785 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 TERB1Q8NA31 727 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 KCNV2Q8TDN2 545 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 HMGB4Q8WW32 186 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 WBP2Q969T9 261 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 TMEM176AQ96HP8 235 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 EDEM2Q9BV94 578 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 KLF16Q9BXK1 252 aaPredicted RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 DUSP16Q9BY84 665 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 ZDHHC4Q9NPG8 344 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 RXFP3Q9NSD7 469 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 DNAJC17Q9NVM6 304 aaKnown RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 MTPAPQ9NVV4 582 aaKnown RBP eCLIP10.32□□□□□ -0.76
VRK3-216ENST00000599342 OSER1Q9NX31 292 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 WDR35Q9P2L0 1181 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 HOOK1Q9UJC3 728 aaKnown RBP10.32□□□□□ -0.76
VRK3-216ENST00000599342 RALGAPA1Q6GYQ0 2036 aa10.32□□□□□ -0.76
VRK3-216ENST00000599342 MDM4O15151 490 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 SLC16A3O15427 465 aaKnown RBP10.31□□□□□ -0.76
VRK3-216ENST00000599342 MAP3K13O43283 966 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 CACNG3O60359 315 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 ADAM23O75077 832 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 HOXB2P14652 356 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 TYRP14679 529 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 BCKDHBP21953 392 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 PRCPP42785 496 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 DHPSP49366 369 aaPredicted RBP10.31□□□□□ -0.76
VRK3-216ENST00000599342 FKBP3Q00688 224 aaKnown RBP10.31□□□□□ -0.76
VRK3-216ENST00000599342 TCEAL6Q6IPX3 200 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 SDE2Q6IQ49 451 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 LPCAT2Q7L5N7 544 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 FMR1NBQ8N0W7 255 aaPredicted RBP10.31□□□□□ -0.76
VRK3-216ENST00000599342 ARHGAP18Q8N392 663 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 SEMA4DQ92854 862 aa10.31□□□□□ -0.76
VRK3-216ENST00000599342 TCEAL3Q969E4 200 aa10.31□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms