RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TMEM174	Q8WUU8	243 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	OTUB2	Q96DC9	234 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	ERLEC1	Q96DZ1	483 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	SPACA7	Q96KW9	195 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	APOBEC3G	Q9HC16	384 aa	Known RBP	11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	CSNK1G1	Q9HCP0	422 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	POLM	Q9NP87	494 aa	Predicted RBP	11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	COMMD8	Q9NX08	183 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	DEC1	Q9P2X7	70 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	HCN2	Q9UL51	889 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	MAPK8IP1	Q9UQF2	711 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	FRMD4B	Q9Y2L6	1034 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	THADA	Q6YHU6	1953 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	NUP205	Q92621	2012 aa		11.13	□□□□□ -0.63
LSM4-205	ENST00000597776	ATXN2	Q99700	1313 aa	Known RBP	11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	HHLA1	C9JL84	531 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	NEDD8-MDP1	E9PL57	170 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	CDX4	O14627	284 aa	Predicted RBP	11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	MDM4	O15151	490 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	MAP3K13	O43283	966 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	GREM1	O60565	184 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	CMA1	P23946	247 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	GCLM	P48507	274 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	VAMP7	P51809	220 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	NDUFA8	P51970	172 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	EGFLAM	Q63HQ2	1017 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	CLEC20A	Q6ZU45	233 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	LPCAT2	Q7L5N7	544 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	UNC93A	Q86WB7	457 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	TERB1	Q8NA31	727 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	TAS1R2	Q8TE23	839 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	TAF4B	Q92750	862 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	BHMT	Q93088	406 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	KLF16	Q9BXK1	252 aa	Predicted RBP	11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	FBXO44	Q9H4M3	255 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	MMRN2	Q9H8L6	949 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	NMUR1	Q9HB89	426 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	TMEM9B	Q9NQ34	198 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	TLR8	Q9NR97	1041 aa	Known RBP	11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	TMEM74B	Q9NUR3	256 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	DNAJC17	Q9NVM6	304 aa	Known RBP	11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	NUDT5	Q9UKK9	219 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	SCML2	Q9UQR0	700 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	HPSE	Q9Y251	543 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776	CEP295	Q9C0D2	2601 aa		11.12	□□□□□ -0.63
LSM4-205	ENST00000597776		A0A1W2PQH9	124 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	IKBKB	O14920	756 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	CALU	O43852	315 aa	Predicted RBP	11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	HOXB2	P14652	356 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	GABRG2	P18507	467 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	CD58	P19256	250 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	ACO1	P21399	889 aa	Known RBP	11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	NR2F2	P24468	414 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	SYK	P43405	635 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	SHC2	P98077	582 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	PPP3CA	Q08209	521 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	INCA1	Q0VD86	236 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	UAP1L1	Q3KQV9	507 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	TRIM61	Q5EBN2	209 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	SH3PXD2A	Q5TCZ1	1133 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	DAB2IP	Q5VWQ8	1189 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	GRAMD4	Q6IC98	578 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	TPGS1	Q6ZTW0	290 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	TOGARAM2	Q6ZUX3	1019 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	HTR3D	Q70Z44	454 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	DEFB119	Q8N690	84 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	CYFIP2	Q96F07	1278 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	SPATA32	Q96LK8	384 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	ACOX2	Q99424	681 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	HNRNPAB	Q99729	332 aa	Known RBP	11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	DUSP9	Q99956	384 aa	Known RBP	11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	BBS2	Q9BXC9	721 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	IMPG2	Q9BZV3	1241 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	CYLD	Q9NQC7	956 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	FSCN3	Q9NQT6	498 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	CALCOCO1	Q9P1Z2	691 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	USP25	Q9UHP3	1055 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	TRAF3IP3	Q9Y228	551 aa		11.11	□□□□□ -0.63
LSM4-205	ENST00000597776	TNRC6B	Q9UPQ9	1833 aa	Known RBP	11.1	□□□□□ -0.63
LSM4-205	ENST00000597776		A0A1W2PQF6	199 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	PRRT4	C9JH25	899 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	CACNG3	O60359	315 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	RHOBTB3	O94955	611 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	KIF20A	O95235	890 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	MYL1	P05976	194 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	RARG	P13631	454 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	TYR	P14679	529 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	ITPKA	P23677	461 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	NTSR1	P30989	418 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	ATP5C1	P36542	298 aa	Known RBP	11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	MAPK8	P45983	427 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	ZNF252P-AS1	Q0IIN9	211 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	PREPL	Q4J6C6	727 aa	Predicted RBP	11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	C10orf120	Q5SQS8	335 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	LYSMD4	Q5XG99	296 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	KIAA1211L	Q6NV74	962 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	TRMT11	Q7Z4G4	463 aa	Known RBP	11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	SCD5	Q86SK9	330 aa		11.1	□□□□□ -0.63
LSM4-205	ENST00000597776	SYT12	Q8IV01	421 aa		11.1	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms