RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 ZFYVE27Q5T4F4 411 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 CCDC181Q5TID7 509 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 RSRC2Q7L4I2 434 aaKnown RBP15.93■□□□□ 0.14
TRIM28-209ENST00000597423 POLNQ7Z5Q5 900 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 STKLD1Q8NE28 680 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 FAM172AQ8WUF8 416 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 CENPIQ92674 756 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-209ENST00000597423 CD101Q93033 1021 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 TIFAQ96CG3 184 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 PIWIL1Q96J94 861 aaKnown RBP15.93■□□□□ 0.14
TRIM28-209ENST00000597423 ZNF512Q96ME7 567 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-209ENST00000597423 CFAP57Q96MR6 1250 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 NAP1L3Q99457 506 aaPredicted RBP15.93■□□□□ 0.14
TRIM28-209ENST00000597423 TTLL2Q9BWV7 592 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 OLA1Q9NTK5 396 aaKnown RBP15.93■□□□□ 0.14
TRIM28-209ENST00000597423 INSL5Q9Y5Q6 135 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 VWA8A3KMH1 1905 aa15.93■□□□□ 0.14
TRIM28-209ENST00000597423 HIDE1A8MVS5 230 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 ARHGEF15O94989 841 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 ZRANB2O95218 330 aaKnown RBP eCLIP15.92■□□□□ 0.14
TRIM28-209ENST00000597423 SULT1E1P49888 294 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 DNA2P51530 1060 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 ATP11AP98196 1134 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 CKAP4Q07065 602 aaKnown RBP15.92■□□□□ 0.14
TRIM28-209ENST00000597423 ZNF252P-AS1Q0IIN9 211 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 TAF10Q12962 218 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 PPM1LQ5SGD2 360 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 SCYL2Q6P3W7 929 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 DNAJB7Q7Z6W7 309 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-209ENST00000597423 RCOR2Q8IZ40 523 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 MNS1Q8NEH6 495 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 GPR152Q8TDT2 470 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 NT5C3BQ969T7 300 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 TRMT2BQ96GJ1 504 aaKnown RBP15.92■□□□□ 0.14
TRIM28-209ENST00000597423 MYRFLQ96LU7 910 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 TBCBQ99426 244 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 NPY6RQ99463 290 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 CARD9Q9H257 536 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 TRPM5Q9NZQ8 1165 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 FBXW11Q9UKB1 542 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 USP18Q9UMW8 372 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 PACSIN2Q9UNF0 486 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-209ENST00000597423 MAGED2Q9UNF1 606 aaPredicted RBP15.92■□□□□ 0.14
TRIM28-209ENST00000597423 NAALADL1Q9UQQ1 740 aa15.92■□□□□ 0.14
TRIM28-209ENST00000597423 A0A1W2PQH9 124 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 M0QYT0 321 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 DDX3YO15523 660 aaKnown RBP15.91■□□□□ 0.14
TRIM28-209ENST00000597423 CLASP2O75122 1294 aaKnown RBP15.91■□□□□ 0.14
TRIM28-209ENST00000597423 ENDOD1O94919 500 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 FGF19O95750 216 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 SPATA31D3P0C874 917 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 ATF6P18850 670 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 MIPP30301 263 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 RDXP35241 583 aaKnown RBP15.91■□□□□ 0.14
TRIM28-209ENST00000597423 PEX5P50542 639 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 CLCN4P51793 760 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 AIF1P55008 147 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 AMPD2Q01433 879 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 DEUP1Q05D60 604 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 CDO1Q16878 200 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 C15orf59Q2T9L4 293 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-209ENST00000597423 ARL13BQ3SXY8 428 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 SEL1L2Q5TEA6 688 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 SPATA31D4Q6ZUB0 917 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 MAP7D3Q8IWC1 876 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 KATNAL2Q8IYT4 538 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 ZNF276Q8N554 614 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 CEP112Q8N8E3 955 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 SLC7A14Q8TBB6 771 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 PGAP3Q96FM1 320 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-209ENST00000597423 RBM41Q96IZ5 413 aaKnown RBP15.91■□□□□ 0.14
TRIM28-209ENST00000597423 CDCA3Q99618 268 aaPredicted RBP15.91■□□□□ 0.14
TRIM28-209ENST00000597423 TLE6Q9H808 572 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 FAM204AQ9H8W3 233 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 CERS4Q9HA82 394 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 GMIPQ9P107 970 aa15.91■□□□□ 0.14
TRIM28-209ENST00000597423 A0A1W2PPC1 479 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 CEP104O60308 925 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 LRCH4O75427 683 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 TRUB2O95900 331 aaKnown RBP15.9■□□□□ 0.14
TRIM28-209ENST00000597423 FYNP06241 537 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 C8AP07357 584 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 RARGP13631 454 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 KPNA1P52294 538 aaPredicted RBP15.9■□□□□ 0.14
TRIM28-209ENST00000597423 COPS2P61201 443 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 USP46P62068 366 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 MTA1Q13330 715 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 CAMK1Q14012 370 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 SNX30Q5VWJ9 437 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 TRNP1Q6NT89 227 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 CHRDL2Q6WN34 429 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 HFE2Q6ZVN8 426 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 BHLHA9Q7RTU4 235 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 SCD5Q86SK9 330 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 PSTKQ8IV42 348 aaKnown RBP15.9■□□□□ 0.14
TRIM28-209ENST00000597423 EXD1Q8NHP7 514 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 EDEM1Q92611 657 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 RNF34Q969K3 372 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 PSMG2Q969U7 264 aa15.9■□□□□ 0.14
TRIM28-209ENST00000597423 PCSK1NQ9UHG2 260 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms