RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 PCNX2A6NKB5 2137 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 AKAP13Q12802 2813 aa11.06□□□□□ -0.64
LIG1-213ENST00000596672 CEP192Q8TEP8 1941 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 PLXND1Q9Y4D7 1925 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 DCDC2BA2VCK2 349 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 HOXC11O43248 304 aaPredicted RBP11.05□□□□□ -0.64
LIG1-213ENST00000596672 TULP3O75386 442 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 CLSTN1O94985 981 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 KAT7O95251 611 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 CISD3P0C7P0 127 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 ADH5P11766 374 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 RARGP13631 454 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 KRT13P13646 458 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 P4HA1P13674 534 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 NUCB2P80303 420 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 MORC3Q14149 939 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 PKDCCQ504Y2 493 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 RAB41Q5JT25 222 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 TCEAL6Q6IPX3 200 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 TOGARAM2Q6ZUX3 1019 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 HTR3DQ70Z44 454 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 PIGZQ86VD9 579 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 RASSF3Q86WH2 238 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 KIAA1958Q8N8K9 716 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 PDZD8Q8NEN9 1154 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 TCEAL3Q969E4 200 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 CCDC47Q96A33 483 aaKnown RBP11.05□□□□□ -0.64
LIG1-213ENST00000596672 ACOX2Q99424 681 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 TPSD1Q9BZJ3 242 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 ARRDC1-AS1Q9H2J1 176 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 SPHK2Q9NRA0 654 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 CLEC4EQ9ULY5 219 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 USP18Q9UMW8 372 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 SLC8A2Q9UPR5 921 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 ATP8B3O60423 1300 aa11.05□□□□□ -0.64
LIG1-213ENST00000596672 CCDC163A0A0D9SF12 145 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 PRRT4C9JH25 899 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 BIN1O00499 593 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 SLC16A3O15427 465 aaKnown RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 RPP40O75818 363 aaKnown RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 STC2O76061 302 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 KIF20AO95235 890 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 KLF8O95600 359 aaPredicted RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 CNR2P34972 360 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 TIE1P35590 1138 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 PDE6CP51160 858 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 FKBP3Q00688 224 aaKnown RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 PDE4CQ08493 712 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 CUL2Q13617 745 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 CRY1Q16526 586 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 FBXO43Q4G163 708 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 DCAF17Q5H9S7 520 aaPredicted RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 PLA2G2CQ5R387 149 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 ARHGAP17Q68EM7 881 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 CCDC186Q7Z3E2 898 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 ARHGEF19Q8IW93 802 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 CAMKK1Q8N5S9 505 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 TXNDC5Q8NBS9 432 aaKnown RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 MDGA1Q8NFP4 955 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 OLIG1Q8TAK6 271 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 SMARCE1Q969G3 411 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 ERLEC1Q96DZ1 483 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 TMEM176AQ96HP8 235 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 ZC3H10Q96K80 434 aaKnown RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 HEXIM2Q96MH2 286 aaKnown RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 PNKPQ96T60 521 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 CD93Q9NPY3 652 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 ARHGEF4Q9NR80 690 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 EHD2Q9NZN4 543 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 EBF1Q9UH73 591 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 MBD1Q9UIS9 605 aaPredicted RBP11.04□□□□□ -0.64
LIG1-213ENST00000596672 MMP17Q9ULZ9 603 aa11.04□□□□□ -0.64
LIG1-213ENST00000596672 CABIN1Q9Y6J0 2220 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 TM4SF5O14894 197 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 ATG13O75143 517 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 EPN2O95208 641 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 APBB3O95704 486 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 EPB41P11171 864 aaKnown RBP11.03□□□□□ -0.64
LIG1-213ENST00000596672 WASP42768 502 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 FMO5P49326 533 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 STX17P56962 302 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 AMPD2Q01433 879 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 APBA1Q02410 837 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 NR1H3Q13133 447 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 PUM1Q14671 1186 aaKnown RBP eCLIP11.03□□□□□ -0.64
LIG1-213ENST00000596672 PPP2R5DQ14738 602 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 CSRP2Q16527 193 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 PM20D1Q6GTS8 502 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 ANO7Q6IWH7 933 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 KIAA1211LQ6NV74 962 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 PRR23CQ6ZRP0 262 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 CEP68Q76N32 757 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 ERMP1Q7Z2K6 904 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 DGLUCYQ7Z3D6 616 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 ELOA2Q8IYF1 753 aaPredicted RBP11.03□□□□□ -0.64
LIG1-213ENST00000596672 ANKRD52Q8NB46 1076 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 UBA3Q8TBC4 463 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 RLN3Q8WXF3 142 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 KREMEN1Q96MU8 473 aa11.03□□□□□ -0.64
LIG1-213ENST00000596672 FBXO44Q9H4M3 255 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms