RNA–Protein interactions for RNA: ENST00000595803.5

SHKBP1-209, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 773 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-209ENST00000595803 UBL4BQ8N7F7 174 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 SPPL3Q8TCT6 385 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 MICAL1Q8TDZ2 1067 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 FNIP1Q8TF40 1166 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 CLEC4CQ8WTT0 213 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 POF1BQ8WVV4 589 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 AUTS2Q8WXX7 1259 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 IRGQQ8WZA9 623 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 NDRG1Q92597 394 aaKnown RBP13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 GOLGA1Q92805 767 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 FAM149B1Q96BN6 582 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 C17orf80Q9BSJ5 609 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 TLR10Q9BXR5 811 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 EMILIN2Q9BXX0 1053 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 IRF2BPLQ9H1B7 796 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 TMEM30AQ9NV96 361 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 ASNSD1Q9NWL6 643 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 PACSIN2Q9UNF0 486 aaPredicted RBP13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 FAM186AA6NE01 2351 aa13.68□□□□□ -0.22
SHKBP1-209ENST00000595803 PRR23AA6NEV1 266 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 C2CD4BA6NLJ0 364 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 MIF4GDA9UHW6 222 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 PROB1E7EW31 1015 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 C5orf67F2Z3F1 127 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 FANCGO15287 622 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 HSF2BPO75031 334 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 RNF8O76064 485 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 ABLIM3O94929 683 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 SDC4P31431 198 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 MAN1A1P33908 653 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 GPR15P49685 360 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 ZNF143P52747 638 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 VCPP55072 806 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 DAOAP59103 153 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 YWHAZP63104 245 aaKnown RBP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 OGDHQ02218 1023 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 IFRD2Q12894 506 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 SDHAF4Q5VUM1 108 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 PM20D1Q6GTS8 502 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 ARCQ7LC44 396 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 GPRIN1Q7Z2K8 1008 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 SCML4Q8N228 414 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 HES6Q96HZ4 224 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 SPATA17Q96L03 361 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 NCAPGQ9BPX3 1015 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 C11orf84Q9BUA3 381 aaPredicted RBP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 FBXO44Q9H4M3 255 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 ENTPD7Q9NQZ7 604 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 COMMD8Q9NX08 183 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 CLDND1Q9NY35 253 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 HSFX1Q9UBD0 423 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 MAFFQ9ULX9 164 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 SNX12Q9UMY4 172 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 USP3Q9Y6I4 520 aa13.67□□□□□ -0.22
SHKBP1-209ENST00000595803 DMXL1Q9Y485 3027 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CCDC66A2RUB6 948 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 H0Y858 1186 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 TNFRSF10BO14763 440 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CAPN9O14815 690 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 TEX28O15482 410 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 RTN3O95197 1032 aaPredicted RBP13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 ATF2P15336 505 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CTNNA2P26232 953 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 SLC5A3P53794 718 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 ERVFC1P60507 584 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 SMC1AQ14683 1233 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CLUL1Q15846 466 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 HADHQ16836 314 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 RHOT1Q8IXI2 618 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 DEFB106AQ8N104 65 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 NIPA2Q8N8Q9 360 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 SCAMP5Q8TAC9 235 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 GIPC2Q8TF65 315 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 PIWIL1Q96J94 861 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 PBKQ96KB5 322 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CEP295NLQ96MC4 621 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 KLHL5Q96PQ7 755 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 OSBPL9Q96SU4 736 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 TCF25Q9BQ70 676 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CNPY3Q9BT09 278 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 DDX23Q9BUQ8 820 aaKnown RBP13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CYP4F11Q9HBI6 524 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 POPDC2Q9HBU9 364 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 TLR9Q9NR96 1032 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CDC23Q9UJX2 597 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 PCDHA3Q9Y5H8 950 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 KIAA1671Q9BY89 1806 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 CACNA1GO43497 2377 aa13.66□□□□□ -0.22
SHKBP1-209ENST00000595803 GVINP1Q7Z2Y8 2422 aa13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 DPYSL4O14531 572 aa13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 KCNK3O14649 394 aa13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 PRRG1O14668 218 aa13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 DDX3YO15523 660 aaKnown RBP13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 SRGAP2O75044 1071 aa13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 SOAT2O75908 522 aa13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 SEC24AO95486 1093 aa13.65□□□□□ -0.22
SHKBP1-209ENST00000595803 VNN2O95498 520 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms