RNA–Protein interactions for RNA: ENST00000595726.1

SHKBP1-208, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 684 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-208ENST00000595726 GMIPQ9P107 970 aa14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 CHORDC1Q9UHD1 332 aaPredicted RBP14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 EIF2B4Q9UI10 523 aaKnown RBP14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 SIX4Q9UIU6 781 aa14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 ODF2LQ9ULJ1 636 aa14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 CLIC4Q9Y696 253 aa14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 STYXL1Q9Y6J8 313 aa14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 KNTC1P50748 2209 aa14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 CABIN1Q9Y6J0 2220 aa14.62□□□□□ -0.07
SHKBP1-208ENST00000595726 TNFSF14O43557 240 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 IL18RAPO95256 599 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 IRF1P10914 325 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 LONP1P36776 959 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 NOP14P78316 857 aaKnown RBP14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 CFHR1Q03591 330 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 GRAMD4Q6IC98 578 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 SLFN12LQ6IEE8 588 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 NUDT18Q6ZVK8 323 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 TOP6BLQ8N6T0 577 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 LRRC52Q8N7C0 313 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 SAAL1Q96ER3 474 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 PCED1BQ96HM7 432 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 CDK5RAP3Q96JB5 506 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 SH3BP1Q9Y3L3 701 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 PCDHGB2Q9Y5G2 931 aa14.61□□□□□ -0.07
SHKBP1-208ENST00000595726 METTL12A8MUP2 240 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 SLC26A4O43511 780 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 PPP3CCP48454 512 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 KIF19Q2TAC6 998 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 FUT11Q495W5 492 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 PREPLQ4J6C6 727 aaPredicted RBP14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 TDRD10Q5VZ19 366 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 IL27RAQ6UWB1 636 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 LRRC69Q6ZNQ3 347 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 DDX42Q86XP3 938 aaKnown RBP eCLIP14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 LSM14AQ8ND56 463 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 C1orf216Q8TAB5 229 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 MKRN2Q9H000 416 aaKnown RBP14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 ZSCAN16Q9H4T2 348 aaPredicted RBP14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 CCSER2Q9H7U1 834 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 ITM2CQ9NQX7 267 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 CDH9Q9ULB4 789 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 SNX11Q9Y5W9 270 aa14.6□□□□□ -0.07
SHKBP1-208ENST00000595726 GOLGA8IPA6NC78 632 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 GOLGA8JA6NMD2 632 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 NEDD8-MDP1E9PL57 170 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 CAPN9O14815 690 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 TRIM66O15016 1216 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 UBA7P41226 1012 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 RBP5P82980 135 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 KCNA1Q09470 495 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 MCM6Q14566 821 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 SUZ12Q15022 739 aaKnown RBP14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 MDH1BQ5I0G3 518 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 HS2ST1Q7LGA3 356 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 NT5DC4Q86YG4 428 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 CADM4Q8NFZ8 388 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 SCFD1Q8WVM8 642 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 OTUB2Q96DC9 234 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 CALML4Q96GE6 196 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 SLITRK1Q96PX8 696 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 USP28Q96RU2 1077 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 USP36Q9P275 1121 aaKnown RBP14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 FBXO2Q9UK22 296 aaPredicted RBP14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 NME7Q9Y5B8 376 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 AK5Q9Y6K8 562 aa14.59□□□□□ -0.07
SHKBP1-208ENST00000595726 CLDN5O00501 218 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 KRT18P05783 430 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 TYRP14679 529 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 JUPP14923 745 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 SCP2P22307 547 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 TPMTP51580 245 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 IL9RQ01113 521 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 POU5F1Q01860 360 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 CEBPZQ03701 1054 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 LAYNQ6UX15 382 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 TPGS1Q6ZTW0 290 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 GPR155Q7Z3F1 870 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 LIMS2Q7Z4I7 341 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 CACUL1Q86Y37 369 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 LURAP1LQ8IV03 231 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 MYCBPAPQ8TBZ2 947 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 CACTINQ8WUQ7 758 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 BHMTQ93088 406 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 C8orf48Q96LL4 319 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 CEP295NLQ96MC4 621 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 BBS2Q9BXC9 721 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 MTMR12Q9C0I1 747 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 PDE11AQ9HCR9 933 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 EHD2Q9NZN4 543 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 DNMT3LQ9UJW3 386 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 ITGA11Q9UKX5 1188 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 NFE2L3Q9Y4A8 694 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 SRPRBQ9Y5M8 271 aaKnown RBP14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 STON1Q9Y6Q2 735 aa14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 MORC2Q9Y6X9 1032 aaPredicted RBP14.58□□□□□ -0.08
SHKBP1-208ENST00000595726 MUC22E2RYF6 1773 aaPredicted RBP14.57□□□□□ -0.08
SHKBP1-208ENST00000595726 CBX4O00257 560 aa14.57□□□□□ -0.08
SHKBP1-208ENST00000595726 RRP8O43159 456 aaKnown RBP14.57□□□□□ -0.08
SHKBP1-208ENST00000595726 ARHGAP6O43182 974 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms