RNA–Protein interactions for RNA: ENST00000591545.5

SMARCA4-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 5,193 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-216ENST00000591545 HS6ST3Q8IZP7 471 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 TERB1Q8NA31 727 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 MYCBPAPQ8TBZ2 947 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 CSGALNACT1Q8TDX6 532 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 ATXN3LQ9H3M9 355 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 hCG_2014768A0A024R1R8 64 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 UBA1P22314 1058 aaKnown RBP13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 SKOR1P84550 965 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 DSG1Q02413 1049 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 BST2Q10589 180 aaKnown RBP13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 CHI3L2Q15782 390 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 SMAD1Q15797 465 aaKnown RBP13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 ANKRD23Q86SG2 305 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 VGLL2Q8N8G2 317 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 TRAPPC12Q8WVT3 735 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 KLRG1Q96E93 195 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 MFSD1Q9H3U5 465 aa13.75□□□□□ -0.21
SMARCA4-216ENST00000591545 A0A0A6YYK5 440 aaPredicted RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 HMGCRP04035 888 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 NQO1P15559 274 aaKnown RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 FLT3LGP49771 235 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 ZRANB3Q5FWF4 1079 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 TIGD7Q6NT04 549 aaPredicted RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 RBM43Q6ZSC3 357 aaKnown RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CASKIN2Q8WXE0 1202 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 USP6NLQ92738 828 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CCDC126Q96EE4 140 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 TMEM176AQ96HP8 235 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 AP4S1Q9Y587 144 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 RARGP13631 454 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 AKAP5P24588 427 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 VSIG10LQ86VR7 867 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 NUP93Q8N1F7 819 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 ACTRT1Q8TDG2 376 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CELF4Q9BZC1 486 aaKnown RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 TMBIM4Q9HC24 238 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 APPL1Q9UKG1 709 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 KANSL1LA0AUZ9 987 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 GEMP55040 296 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 NUP107P57740 925 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 MYL6P60660 151 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CRYMQ14894 314 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 FAM110CQ1W6H9 321 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CENPPQ6IPU0 288 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 LRRC34Q8IZ02 419 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 FAM162AQ96A26 154 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 DEFB118Q96PH6 123 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 NAT9Q9BTE0 207 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 ALDH1A2O94788 518 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 ZBTB48P10074 688 aaPredicted RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 VCLP18206 1134 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CREMQ03060 361 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 PTPN11Q06124 597 aaPredicted RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CCDC85BQ15834 202 aaPredicted RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CCDC149Q6ZUS6 474 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 KIF2BQ8N4N8 673 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 FIBCD1Q8N539 461 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 VPS37AQ8NEZ2 397 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CNPY3Q9BT09 278 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 MRPL17Q9NRX2 175 aaKnown RBP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 STAU2Q9NUL3 570 aaKnown RBP eCLIP13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 FAM50BQ9Y247 325 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 CAMTA1Q9Y6Y1 1673 aa13.74□□□□□ -0.21
SMARCA4-216ENST00000591545 SPDYE5A6NIY4 337 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 RTN3O95197 1032 aaPredicted RBP13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 TAL1P17542 331 aaPredicted RBP13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 GRK4P32298 578 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 TTLL9Q3SXZ7 439 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 SPDYE7PQ495Y7 208 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 OTOP1Q7RTM1 612 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 SKA1Q96BD8 255 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 SMARCAL1Q9NZC9 954 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 DTNAQ9Y4J8 743 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 C2orf81A6NN90 581 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 CNTFP26441 200 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 SERPINB1P30740 379 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 LRRC36Q1X8D7 754 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 FAM83EQ2M2I3 478 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 PRAMEF19Q5SWL8 479 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 DDX42Q86XP3 938 aaKnown RBP eCLIP13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 ILKAPQ9H0C8 392 aaPredicted RBP13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 TMEM161AQ9NX61 479 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 DLGAP2Q9P1A6 1054 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 DCDC2Q9UHG0 476 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 TRIM49D1C9J1S8 452 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 ALBP02768 609 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 THRAP10827 490 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 PTGER2P43116 358 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 VCPP55072 806 aaKnown RBP13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 ORC1Q13415 861 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 ZNF284Q2VY69 593 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 SPDYAQ5MJ70 313 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 TRIM65Q6PJ69 517 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 PHF21AQ96BD5 680 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 CNBD2Q96M20 576 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 SELENONQ9NZV5 590 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 PHTF1Q9UMS5 762 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 CNTNAP2Q9UHC6 1331 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 EVPLLA8MZ36 301 aa13.73□□□□□ -0.21
SMARCA4-216ENST00000591545 CYP3A4P08684 503 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms