RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 MATR3P43243 847 aaKnown RBP eCLIP10.94□□□□□ -0.66
SS18-221ENST00000582448 GOLGA8FQ08AF8 430 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 GOLGA8DPQ0D2H9 430 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 EXOC3L4Q17RC7 722 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 C17orf53Q8N3J3 647 aaPredicted RBP10.94□□□□□ -0.66
SS18-221ENST00000582448 TXLNBQ8N3L3 684 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 POMGNT1Q8WZA1 660 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 RABGGTAQ92696 567 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 GAD1Q99259 594 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 RPP25Q9BUL9 199 aaKnown RBP10.94□□□□□ -0.66
SS18-221ENST00000582448 LSM14BQ9BX40 385 aaKnown RBP10.94□□□□□ -0.66
SS18-221ENST00000582448 MINDY3Q9H8M7 445 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 IFT122Q9HBG6 1241 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 DMAC2Q9NW81 257 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 MARCH5Q9NX47 278 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 MIOSQ9NXC5 875 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 HSPBP1Q9NZL4 362 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 CEP72Q9P209 647 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 DAAM1Q9Y4D1 1078 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 HES2Q9Y543 173 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 NUMBLQ9Y6R0 609 aa10.94□□□□□ -0.66
SS18-221ENST00000582448 CNTNAP2Q9UHC6 1331 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 ENC1O14682 589 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 TGM5O43548 720 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 KRT37O76014 449 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 ERLIN2O94905 339 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 LDHAP00338 332 aaKnown RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 LAMP2P13473 410 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 GLULP15104 373 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 RPL17P18621 184 aaKnown RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 GARTP22102 1010 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 NME2P22392 152 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 GLRA2P23416 452 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 MLH1P40692 756 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 CASP4P49662 377 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 SCNN1GP51170 649 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 GPC5P78333 572 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 KRT83P78385 493 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 BFSP1Q12934 665 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 UBXN11Q5T124 520 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 SEZ6L2Q6UXD5 910 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 SRGAP1Q7Z6B7 1085 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 ZAR1Q86SH2 424 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 COLGALT2Q8IYK4 626 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 CCDC170Q8IYT3 715 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 PRPF31Q8WWY3 499 aaKnown RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 SLC35C1Q96A29 364 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 ZNF707Q96C28 371 aaPredicted RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 CPB2Q96IY4 423 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 FANCD2OSQ96PS1 177 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 COLEC11Q9BWP8 271 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 EIF2AQ9BY44 585 aaKnown RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 DEF6Q9H4E7 631 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 PCIF1Q9H4Z3 704 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 C12orf49Q9H741 205 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 LUC7LQ9NQ29 371 aaKnown RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 PLCB1Q9NQ66 1216 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 SPATA6Q9NWH7 488 aaPredicted RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 TRMT1Q9NXH9 659 aaKnown RBP10.93□□□□□ -0.66
SS18-221ENST00000582448 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.93□□□□□ -0.66
SS18-221ENST00000582448 DLGAP2Q9P1A6 1054 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 ARHGAP28Q9P2N2 729 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 NCDNQ9UBB6 729 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 SIK3Q9Y2K2 1263 aa10.93□□□□□ -0.66
SS18-221ENST00000582448 ANKRD33BA6NCL7 494 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 ARL5CA6NH57 179 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 FAM170BA6NMN3 283 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 GIPC1O14908 333 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 P4HA2O15460 535 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 LAMTOR5O43504 91 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 CCDC172P0C7W6 258 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 TNNT1P13805 278 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 SPINK2P20155 84 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 HOXA11P31270 313 aaPredicted RBP10.92□□□□□ -0.66
SS18-221ENST00000582448 FMO5P49326 533 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 KLK7P49862 253 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 VAMP7P51809 220 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 NTHL1P78549 312 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 CDK17Q00537 523 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 MYL7Q01449 175 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 DSG1Q02413 1049 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 CSTF1Q05048 431 aaKnown RBP10.92□□□□□ -0.66
SS18-221ENST00000582448 ZNF252P-AS1Q0IIN9 211 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 LAMTOR4Q0VGL1 99 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 UBXN2BQ14CS0 331 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 SPA17Q15506 151 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 SNRNP35Q16560 246 aaKnown RBP10.92□□□□□ -0.66
SS18-221ENST00000582448 SFMBT2Q5VUG0 894 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 RRAGAQ7L523 313 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 GRASPQ7Z6J2 395 aaPredicted RBP10.92□□□□□ -0.66
SS18-221ENST00000582448 TMEM139Q8IV31 216 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 GPD1LQ8N335 351 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 RNF149Q8NC42 400 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 PJA1Q8NG27 643 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 GRIN3AQ8TCU5 1115 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 SYN2Q92777 582 aaPredicted RBP10.92□□□□□ -0.66
SS18-221ENST00000582448 KCNN1Q92952 543 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 SHDQ96IW2 340 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 PPP1R13BQ96KQ4 1090 aa10.92□□□□□ -0.66
SS18-221ENST00000582448 CCDC42Q96M95 316 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms