RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 LRRC4Q9HBW1 653 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 CLIC5Q9NZA1 410 aa21.14■□□□□ 0.97
SS18-218ENST00000581021 LIMA1Q9UHB6 759 aaKnown RBP21.14■□□□□ 0.97
SS18-218ENST00000581021 MRPS17Q9Y2R5 130 aaKnown RBP21.14■□□□□ 0.97
SS18-218ENST00000581021 DMDP11532 3685 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 YJEFN3A6XGL0 299 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 E7ENQ6 273 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 EPHB6O15197 1021 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 LCP1P13796 627 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 CLCN1P35523 988 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 YWHAGP61981 247 aaKnown RBP eCLIP21.13■□□□□ 0.97
SS18-218ENST00000581021 NHLH1Q02575 133 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 GAS6Q14393 721 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 C10orf120Q5SQS8 335 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 KLHDC10Q6PID8 442 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 Q6ZS52 159 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 BBS7Q8IWZ6 715 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 CPA6Q8N4T0 437 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 KIAA1958Q8N8K9 716 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 ATP2A3Q93084 1043 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 FAM81BQ96LP2 452 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 GANQ9H2C0 597 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 FAM86C1Q9NVL1 165 aa21.13■□□□□ 0.97
SS18-218ENST00000581021 VPS13AQ96RL7 3174 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 CACNA1IQ9P0X4 2223 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 E2F8A0AVK6 867 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 SYCE3A1L190 88 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 THAP12O43422 761 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 UCHL3P15374 230 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 ATP5C1P36542 298 aaKnown RBP21.12■□□□□ 0.97
SS18-218ENST00000581021 RPS9P46781 194 aaKnown RBP21.12■□□□□ 0.97
SS18-218ENST00000581021 RPL34P49207 117 aaKnown RBP21.12■□□□□ 0.97
SS18-218ENST00000581021 PSEN1P49768 467 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 PTPN5P54829 565 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 DAOAP59103 153 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 CCINQ13939 588 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 ANGPT1Q15389 498 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 FSTL4Q6MZW2 842 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 SLC47A2Q86VL8 602 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 DDX42Q86XP3 938 aaKnown RBP eCLIP21.12■□□□□ 0.97
SS18-218ENST00000581021 FAM71AQ8IYT1 594 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 ADGRG2Q8IZP9 1017 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 SIX6OS1Q8N1H7 587 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 ZNF276Q8N554 614 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 EZH1Q92800 747 aaPredicted RBP21.12■□□□□ 0.97
SS18-218ENST00000581021 PHOX2BQ99453 314 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 PRRX2Q99811 253 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 CHRDQ9H2X0 955 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 LMAN1LQ9HAT1 526 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 DNMT3LQ9UJW3 386 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 SIK3Q9Y2K2 1263 aa21.12■□□□□ 0.97
SS18-218ENST00000581021 LGALS16A8MUM7 142 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 MTAPQ13126 283 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 RAPGEF1Q13905 1077 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 DRAP1Q14919 205 aaPredicted RBP21.11■□□□□ 0.97
SS18-218ENST00000581021 TMEM196Q5HYL7 178 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 RHBDF2Q6PJF5 856 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 MIB1Q86YT6 1006 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 SCML4Q8N228 414 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 WDTC1Q8N5D0 677 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 P2RY11Q96G91 374 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 BPIFA3Q9BQP9 254 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 CNGB3Q9NQW8 809 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 TJP2Q9UDY2 1190 aa21.11■□□□□ 0.97
SS18-218ENST00000581021 TRDMT1O14717 391 aaKnown RBP21.1■□□□□ 0.97
SS18-218ENST00000581021 NFATC1O95644 943 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 KLKB1P03952 638 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 OPRD1P41143 372 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 MESP2Q0VG99 397 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 EFEMP1Q12805 493 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 DHCR24Q15392 516 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 MEA1Q16626 185 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 BSPRYQ5W0U4 402 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 C1orf228Q6PIY5 440 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 C12orf40Q86WS4 652 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 PASD1Q8IV76 773 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 C1orf210Q8IVY1 113 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 ARHGAP18Q8N392 663 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 EDEM1Q92611 657 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 HSFY1Q96LI6 401 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 PLCB1Q9NQ66 1216 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 C2orf42Q9NWW7 574 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 RASAL2Q9UJF2 1139 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 SH3BP1Q9Y3L3 701 aa21.1■□□□□ 0.97
SS18-218ENST00000581021 ANTXRLA6NF34 631 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 LRRC10BA6NIK2 292 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 F8VZ95 297 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 STC2O76061 302 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 EGFP01133 1207 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 RALAP11233 206 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 PLA2G5P39877 138 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 GALK1P51570 392 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 PKN3Q6P5Z2 889 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 Q6ZNB5 142 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 HTR3DQ70Z44 454 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 SLC4A5Q9BY07 1137 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 MIS12Q9H081 205 aa21.09■□□□□ 0.97
SS18-218ENST00000581021 FAM207AQ9NSI2 230 aaPredicted RBP21.09■□□□□ 0.97
SS18-218ENST00000581021 SPATA6Q9NWH7 488 aaPredicted RBP21.09■□□□□ 0.97
SS18-218ENST00000581021 SLC9A3R1O14745 358 aaPredicted RBP21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms