RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 TMEM110-MUSTN1A8MSY1 372 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 DDX3YO15523 660 aaKnown RBP15.96■□□□□ 0.15
SS18-215ENST00000580642 LRCH4O75427 683 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 ARHGEF15O94989 841 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 GJB6O95452 261 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 FYNP06241 537 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 PBX2P40425 430 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 CETN2P41208 172 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 CLCN4P51793 760 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 PTPROQ16827 1216 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 PABPC1LQ4VXU2 614 aaKnown RBP15.96■□□□□ 0.15
SS18-215ENST00000580642 DCAF6Q58WW2 860 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 PLPP4Q5VZY2 271 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 BTBD8Q5XKL5 378 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 MSANTD2Q6P1R3 559 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 VSIG1Q86XK7 387 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 KATNAL2Q8IYT4 538 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 TTC9BQ8N6N2 239 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 KREMEN2Q8NCW0 462 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 PPP2R3CQ969Q6 453 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 PSMG2Q969U7 264 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 OSBPL9Q96SU4 736 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 NKX2-4Q9H2Z4 354 aa15.96■□□□□ 0.15
SS18-215ENST00000580642 COL4A4P53420 1690 aaPredicted RBP15.95■□□□□ 0.14
SS18-215ENST00000580642 TMEM265A0A087WTH1 108 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 HIDE1A8MVS5 230 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 PAPLNO95428 1278 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 FGF19O95750 216 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 HNRNPA1P09651 372 aaKnown RBP eCLIP15.95■□□□□ 0.14
SS18-215ENST00000580642 RALAP11233 206 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 NCAM1P13591 858 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 PFKLP17858 780 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 GBP1P32455 592 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 RDXP35241 583 aaKnown RBP15.95■□□□□ 0.14
SS18-215ENST00000580642 TUBP50607 506 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 KPNA1P52294 538 aaPredicted RBP15.95■□□□□ 0.14
SS18-215ENST00000580642 COPS2P61201 443 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 TUBB4BP68371 445 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 CKAP4Q07065 602 aaKnown RBP15.95■□□□□ 0.14
SS18-215ENST00000580642 NNTQ13423 1086 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 ACBD5Q5T8D3 534 aaPredicted RBP15.95■□□□□ 0.14
SS18-215ENST00000580642 TRNP1Q6NT89 227 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 KLHDC10Q6PID8 442 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 SCD5Q86SK9 330 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 ELMOD1Q8N336 334 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 LEMD2Q8NC56 503 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 EXD1Q8NHP7 514 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 RNF139Q8WU17 664 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 FAM172AQ8WUF8 416 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 FBXO32Q969P5 355 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 TIFAQ96CG3 184 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 RBM41Q96IZ5 413 aaKnown RBP15.95■□□□□ 0.14
SS18-215ENST00000580642 RPGRIP1Q96KN7 1286 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 NAP1L3Q99457 506 aaPredicted RBP15.95■□□□□ 0.14
SS18-215ENST00000580642 GOLPH3Q9H4A6 298 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 MRFAP1Q9Y605 127 aa15.95■□□□□ 0.14
SS18-215ENST00000580642 SOBPA7XYQ1 873 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 ZNF487B1APH4 448 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 KCNK3O14649 394 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 MDM4O15151 490 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 PRPSAP2O60256 369 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 GRAP2O75791 330 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 IGLV3-25P01717 112 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 LRG1P02750 347 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 HMGA1P17096 107 aaKnown RBP15.94■□□□□ 0.14
SS18-215ENST00000580642 MIPP30301 263 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 CA8P35219 290 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 GPR15P49685 360 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 ZNF135P52742 658 aaPredicted RBP15.94■□□□□ 0.14
SS18-215ENST00000580642 SLC25A11Q02978 314 aaKnown RBP15.94■□□□□ 0.14
SS18-215ENST00000580642 TWF1Q12792 350 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 TAF10Q12962 218 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 TAF12Q16514 161 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 LRIT3Q3SXY7 679 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 SND1Q7KZF4 910 aaKnown RBP eCLIP15.94■□□□□ 0.14
SS18-215ENST00000580642 RCOR2Q8IZ40 523 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 RASGEF1CQ8N431 466 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 STKLD1Q8NE28 680 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 ACTRT1Q8TDG2 376 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 SLC22A17Q8WUG5 538 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 NTAN1Q96AB6 310 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 CFAP57Q96MR6 1250 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 SMOC2Q9H3U7 446 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 PRDM16Q9HAZ2 1276 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 ZDHHC7Q9NXF8 308 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 LMCD1Q9NZU5 365 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 MTUS1Q9ULD2 1270 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 USP18Q9UMW8 372 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 USTQ9Y2C2 406 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 EFR3BQ9Y2G0 817 aa15.94■□□□□ 0.14
SS18-215ENST00000580642 NCK2O43639 380 aa15.93■□□□□ 0.14
SS18-215ENST00000580642 CLASP2O75122 1294 aaKnown RBP15.93■□□□□ 0.14
SS18-215ENST00000580642 ZRANB2O95218 330 aaKnown RBP eCLIP15.93■□□□□ 0.14
SS18-215ENST00000580642 C8AP07357 584 aa15.93■□□□□ 0.14
SS18-215ENST00000580642 SLC2A3P11169 496 aa15.93■□□□□ 0.14
SS18-215ENST00000580642 PTPN7P35236 360 aa15.93■□□□□ 0.14
SS18-215ENST00000580642 PAFAH1B1P43034 410 aa15.93■□□□□ 0.14
SS18-215ENST00000580642 SULT1E1P49888 294 aa15.93■□□□□ 0.14
SS18-215ENST00000580642 HDAC4P56524 1084 aa15.93■□□□□ 0.14
SS18-215ENST00000580642 USP46P62068 366 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms