RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PLA2G4AP47712 749 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 ZNF132P52740 706 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 STILQ15468 1287 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 CNGA2Q16280 664 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 GAB4Q2WGN9 574 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 TRIM65Q6PJ69 517 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 RHBDF2Q6PJF5 856 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 ZNF276Q8N554 614 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 ATRIPQ8WXE1 791 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 NELL1Q92832 810 aa25.11■■□□□ 1.61
SHMT1-206ENST00000579558 CDK5RAP1Q96SZ6 601 aaKnown RBP25.11■■□□□ 1.61
SHMT1-206ENST00000579558 LSM7Q9UK45 103 aaKnown RBP25.11■■□□□ 1.61
SHMT1-206ENST00000579558 WDR3Q9UNX4 943 aaKnown RBP eCLIP25.11■■□□□ 1.61
SHMT1-206ENST00000579558 M0QYV0 167 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 RNF40O75150 1001 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 ZBED1O96006 694 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 ADH5P11766 374 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 SLC9A1P19634 815 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 NRLP54845 237 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 YWHAGP61981 247 aaKnown RBP eCLIP25.1■■□□□ 1.61
SHMT1-206ENST00000579558 ADIGQ0VDE8 80 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 MAN2A1Q16706 1144 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 EXOC3L4Q17RC7 722 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 FBXO43Q4G163 708 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 PKDCCQ504Y2 493 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 PKN3Q6P5Z2 889 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 ZBTB44Q8NCP5 570 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 ZSWIM1Q9BR11 485 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 C2orf42Q9NWW7 574 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 VPS13AQ96RL7 3174 aa25.1■■□□□ 1.61
SHMT1-206ENST00000579558 ZFHX2Q9C0A1 2572 aaPredicted RBP25.09■■□□□ 1.61
SHMT1-206ENST00000579558 GTPBP10A4D1E9 387 aaKnown RBP25.09■■□□□ 1.61
SHMT1-206ENST00000579558 PAPSS2O95340 614 aaPredicted RBP25.09■■□□□ 1.61
SHMT1-206ENST00000579558 MFAP3P55082 362 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 HSP90AA4PQ58FG1 418 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 CT47A1Q5JQC4 288 aaPredicted RBP25.09■■□□□ 1.61
SHMT1-206ENST00000579558 LY6G5CQ5SRR4 150 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 PM20D1Q6GTS8 502 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 HTR3DQ70Z44 454 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 ENOSF1Q7L5Y1 443 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 MIB1Q86YT6 1006 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 SIX6OS1Q8N1H7 587 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 KCTD13Q8WZ19 329 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 FAM81BQ96LP2 452 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 RASAL2Q9UJF2 1139 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 CNTN6Q9UQ52 1028 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 MYOFQ9NZM1 2061 aa25.09■■□□□ 1.61
SHMT1-206ENST00000579558 ATG2BQ96BY7 2078 aa25.08■■□□□ 1.61
SHMT1-206ENST00000579558 ATG13O75143 517 aa25.08■■□□□ 1.61
SHMT1-206ENST00000579558 LMNAP02545 664 aaKnown RBP25.08■■□□□ 1.61
SHMT1-206ENST00000579558 GJB7Q6PEY0 223 aa25.08■■□□□ 1.61
SHMT1-206ENST00000579558 RSRC2Q7L4I2 434 aaKnown RBP25.08■■□□□ 1.61
SHMT1-206ENST00000579558 NDRG1Q92597 394 aaKnown RBP25.08■■□□□ 1.61
SHMT1-206ENST00000579558 EZH1Q92800 747 aaPredicted RBP25.08■■□□□ 1.61
SHMT1-206ENST00000579558 SECISBP2LQ93073 1101 aaKnown RBP25.08■■□□□ 1.61
SHMT1-206ENST00000579558 K7ESF4 209 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 GREM1O60565 184 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 LCP1P13796 627 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 PRKCSHP14314 528 aaPredicted RBP25.07■■□□□ 1.6
SHMT1-206ENST00000579558 RGS7P49802 495 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 GAD2Q05329 585 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 EFEMP1Q12805 493 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 RBM43Q6ZSC3 357 aaKnown RBP25.07■■□□□ 1.6
SHMT1-206ENST00000579558 BHLHA9Q7RTU4 235 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 SLC35F5Q8WV83 523 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 TUBGCP2Q9BSJ2 902 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 SPHK2Q9NRA0 654 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 APEX2Q9UBZ4 518 aa25.07■■□□□ 1.6
SHMT1-206ENST00000579558 CHURC1-FNTBB4DL54 471 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 LILRB5O75023 590 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 PON1P27169 355 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 EIF2DP41214 584 aaKnown RBP25.06■■□□□ 1.6
SHMT1-206ENST00000579558 SLC6A11P48066 632 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 APBA1Q02410 837 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 ARHGAP44Q17R89 818 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 VWA3BQ502W6 1294 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 BTBD8Q5XKL5 378 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 PMF1Q6P1K2 205 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 C12orf40Q86WS4 652 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 RPLP0P6Q8NHW5 317 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 PNKPQ96T60 521 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 NDST4Q9H3R1 872 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 CNGB3Q9NQW8 809 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 STRIP2Q9ULQ0 834 aa25.06■■□□□ 1.6
SHMT1-206ENST00000579558 KCNJ18B7U540 433 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 HOXC11O43248 304 aaPredicted RBP25.05■■□□□ 1.6
SHMT1-206ENST00000579558 STC2O76061 302 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 MBD3O95983 291 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 COG7P83436 770 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 DMWDQ09019 674 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 KCNJ12Q14500 433 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 ANO4Q32M45 955 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 TMEM25Q86YD3 366 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 CCDC26Q8TAB7 109 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 SAMSN1Q9NSI8 373 aaKnown RBP25.05■■□□□ 1.6
SHMT1-206ENST00000579558 MARCH2Q9P0N8 246 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 SLC8A2Q9UPR5 921 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 KIAA1549LQ6ZVL6 1849 aa25.05■■□□□ 1.6
SHMT1-206ENST00000579558 PALM2-AKAP2B1ALY0 433 aaPredicted RBP25.04■■□□□ 1.6
SHMT1-206ENST00000579558 PIK3R2O00459 728 aa25.04■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms