RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 LSM7Q9UK45 103 aaKnown RBP20.47■□□□□ 0.87
SS18-209ENST00000578595 OTOL1A6NHN0 477 aaPredicted RBP20.46■□□□□ 0.87
SS18-209ENST00000578595 HMBSP08397 361 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 MAGEA9P43362 315 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 COPB1P53618 953 aaKnown RBP20.46■□□□□ 0.87
SS18-209ENST00000578595 MLLT6P55198 1093 aaPredicted RBP20.46■□□□□ 0.87
SS18-209ENST00000578595 ANGPT1Q15389 498 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 RNF139Q8WU17 664 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 SHC3Q92529 594 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 EXOC4Q96A65 974 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 MIS12Q9H081 205 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 PDCL3Q9H2J4 239 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 RBM12Q9NTZ6 932 aaKnown RBP20.46■□□□□ 0.87
SS18-209ENST00000578595 FAM86C1Q9NVL1 165 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 CLIC5Q9NZA1 410 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 TBC1D14Q9P2M4 693 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 STRIP2Q9ULQ0 834 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 CNTN6Q9UQ52 1028 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 FHOD1Q9Y613 1164 aa20.46■□□□□ 0.87
SS18-209ENST00000578595 E2F8A0AVK6 867 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 SHISA7A6NL88 538 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 BECN2A8MW95 431 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 LAMTOR5O43504 91 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 GJA4P35212 333 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 PTK2Q05397 1052 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 KCNMA1Q12791 1236 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 TCF15Q12870 199 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 PKDCCQ504Y2 493 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 PMF1Q6P1K2 205 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 DENND1BQ6P3S1 775 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 PASD1Q8IV76 773 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 ZNF606Q8WXB4 792 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 KCTD13Q8WZ19 329 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 ZFRQ96KR1 1074 aaKnown RBP20.45■□□□□ 0.86
SS18-209ENST00000578595 KIAA1549LQ6ZVL6 1849 aa20.45■□□□□ 0.86
SS18-209ENST00000578595 CYP17A1P05093 508 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 GRSF1Q12849 480 aaKnown RBP eCLIP20.44■□□□□ 0.86
SS18-209ENST00000578595 DRAP1Q14919 205 aaPredicted RBP20.44■□□□□ 0.86
SS18-209ENST00000578595 KLHDC7AQ5VTJ3 777 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 BBS7Q8IWZ6 715 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 SLC35F5Q8WV83 523 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 EDEM1Q92611 657 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 KLF16Q9BXK1 252 aaPredicted RBP20.44■□□□□ 0.86
SS18-209ENST00000578595 IRF2BPLQ9H1B7 796 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 CNGB3Q9NQW8 809 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 FAM207AQ9NSI2 230 aaPredicted RBP20.44■□□□□ 0.86
SS18-209ENST00000578595 DLGAP2Q9P1A6 1054 aa20.44■□□□□ 0.86
SS18-209ENST00000578595 SMTNL1A8MU46 457 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 ADH1CP00326 375 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 KRT9P35527 623 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 KLK7P49862 253 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 ZNF165P49910 485 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 UBXN1Q04323 297 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 C1orf210Q8IVY1 113 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 CD101Q93033 1021 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 WBP2Q969T9 261 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 FAM149B1Q96BN6 582 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 P2RY13Q9BPV8 354 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 OLA1Q9NTK5 396 aaKnown RBP20.43■□□□□ 0.86
SS18-209ENST00000578595 MARCH2Q9P0N8 246 aa20.43■□□□□ 0.86
SS18-209ENST00000578595 ARIH1Q9Y4X5 557 aaPredicted RBP20.43■□□□□ 0.86
SS18-209ENST00000578595 WDFY4Q6ZS81 3184 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 SLC12A8A0AV02 714 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 YJEFN3A6XGL0 299 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 E7ENQ6 273 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 FOXN3O00409 490 aaPredicted RBP20.42■□□□□ 0.86
SS18-209ENST00000578595 ADH5P11766 374 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 UCHL3P15374 230 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 RPS9P46781 194 aaKnown RBP20.42■□□□□ 0.86
SS18-209ENST00000578595 DAOAP59103 153 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 NHLH1Q02575 133 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 DHCR24Q15392 516 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 ANO4Q32M45 955 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 DGKKQ5KSL6 1271 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 LY6G5CQ5SRR4 150 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 NAIF1Q69YI7 327 aaPredicted RBP20.42■□□□□ 0.86
SS18-209ENST00000578595 PM20D1Q6GTS8 502 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 KLHDC10Q6PID8 442 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 CLEC4CQ8WTT0 213 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 CLDN23Q96B33 292 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 CHFRQ96EP1 664 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 HSFY1Q96LI6 401 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 LIMA1Q9UHB6 759 aaKnown RBP20.42■□□□□ 0.86
SS18-209ENST00000578595 CEP83Q9Y592 693 aa20.42■□□□□ 0.86
SS18-209ENST00000578595 MYO18AQ92614 2054 aaKnown RBP20.42■□□□□ 0.86
SS18-209ENST00000578595 LGALS16A8MUM7 142 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 FBXO21O94952 628 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 LTFP02788 710 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 CHRNB1P11230 501 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 ATP1A3P13637 1013 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 GPD2P43304 727 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 ACADSBP45954 432 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 BPIFB4P59827 614 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 POLR2FP61218 127 aaKnown RBP20.41■□□□□ 0.86
SS18-209ENST00000578595 COG7P83436 770 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 MTAPQ13126 283 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 NCAPHQ15003 741 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 SYCP1Q15431 976 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 BSPRYQ5W0U4 402 aa20.41■□□□□ 0.86
SS18-209ENST00000578595 Q6ZS52 159 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms