RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 TMEFF1Q8IYR6 380 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CFAP52Q8N1V2 620 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 SRBD1Q8N5C6 995 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 PSD4Q8NDX1 1056 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 NSUN7Q8NE18 718 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 LINS1Q8NG48 757 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 MBD3L2Q8NHZ7 208 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 NFKBIDQ8NI38 313 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 METTL6Q8TCB7 284 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 SSH3Q8TE77 659 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 SLC22A17Q8WUG5 538 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 TFAP2CQ92754 450 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 FAM120BQ96EK7 910 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 BORCS6Q96GS4 357 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 REXO5Q96IC2 774 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 AJUBAQ96IF1 538 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ZBTB45Q96K62 511 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 PPP1R10Q96QC0 940 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 TRIB1Q96RU8 372 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 GPHA2Q96T91 129 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ADPGKQ9BRR6 497 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 PTDSS2Q9BVG9 487 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 TLR10Q9BXR5 811 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 TMEM168Q9H0V1 697 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 STN1Q9H668 368 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 GBA2Q9HCG7 927 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 ERVK-5Q9HDB9 667 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 IL23AQ9NPF7 189 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ARGLU1Q9NWB6 273 aaPredicted RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 PPP1R14DQ9NXH3 145 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 ETAA1Q9NY74 926 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CEP72Q9P209 647 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 POGKQ9P215 609 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 SUFUQ9UMX1 484 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 CLCA2Q9UQC9 943 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 FRMD4BQ9Y2L6 1034 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 MRPS17Q9Y2R5 130 aaKnown RBP2.3□□□□□ -2.04
CHD3-217ENST00000574022 ZNF711Q9Y462 761 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 PCDHB7Q9Y5E2 793 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 PCDHA5Q9Y5H7 936 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 PCDHA10Q9Y5I2 948 aa2.3□□□□□ -2.04
CHD3-217ENST00000574022 DRGXA6NNA5 263 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SLC38A8A6NNN8 435 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 AGAP14A8MT82 685 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 PRR5-ARHGAP8B1AHC4 643 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TMEM232C9JQI7 657 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CLGNO14967 610 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 FYB1O15117 783 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 HNRNPRO43390 633 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 TRIM13O60858 407 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TBCAO75347 108 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 ERAL1O75616 437 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 GJB3O75712 270 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 PRSS23O95084 383 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CCNDBP1O95273 360 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SPARCP09486 303 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 SPATA31D3P0C874 917 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZNF888P0CJ79 500 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 NR2F1P10589 423 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TNNT1P13805 278 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZNF28P17035 718 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 IL11P20809 199 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 IGFBP6P24592 240 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 RBL1P28749 1068 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 UQCRC1P31930 480 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 HADHAP40939 763 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 RGS2P41220 211 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 GPD2P43304 727 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 GSTM5P46439 218 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 AFF3P51826 1226 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 CDR1P51861 262 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ZNF134P52741 427 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CDH15P55291 814 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 LOXL3P58215 753 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 ADAM8P78325 824 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 HGFACQ04756 655 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 RNASELQ05823 741 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 EPS8Q12929 822 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 PTP4A2Q12974 167 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 STK4Q13043 487 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 FHL3Q13643 280 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 CCNIQ14094 377 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 E2F2Q14209 437 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TBCCQ15814 346 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TBR1Q16650 682 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 RSPO4Q2I0M5 234 aaPredicted RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 TMEM266Q2M3C6 531 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 FAM214AQ32MH5 1076 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 DUSP28Q4G0W2 176 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 LRRC24Q50LG9 513 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TMEM196Q5HYL7 178 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 PRR31Q5SQ13 230 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 LRCH2Q5VUJ6 765 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 GPR139Q6DWJ6 353 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TMEM132EQ6IEE7 984 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TAPT1Q6NXT6 567 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 RPUSD3Q6P087 351 aaKnown RBP2.29□□□□□ -2.04
CHD3-217ENST00000574022 MSANTD2Q6P1R3 559 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 TMEM108Q6UXF1 575 aa2.29□□□□□ -2.04
CHD3-217ENST00000574022 NFXL1Q6ZNB6 911 aa2.29□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms