RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 BBS9Q3SYG4 887 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 SYCP2LQ5T4T6 812 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 PAQR9Q6ZVX9 377 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 ATP11CQ8NB49 1132 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 GDAP1Q8TB36 358 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 NDRG1Q92597 394 aaKnown RBP21.1■□□□□ 0.97
CLN3-230ENST00000568076 MRRFQ96E11 262 aaKnown RBP21.1■□□□□ 0.97
CLN3-230ENST00000568076 HNRNPABQ99729 332 aaKnown RBP21.1■□□□□ 0.97
CLN3-230ENST00000568076 NCAPGQ9BPX3 1015 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 KIF9Q9HAQ2 790 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 TRPM7Q96QT4 1865 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 TCP11X1B4DZS4 312 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 CLDN5O00501 218 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 CYB561D2O14569 222 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 KCNN4O15554 427 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 BEST1O76090 585 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 CYP2F1P24903 491 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 RNASELQ05823 741 aaKnown RBP21.1■□□□□ 0.97
CLN3-230ENST00000568076 SPRED3Q2MJR0 410 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 GNASQ5JWF2 1037 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 KIAA0319Q5VV43 1072 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 WSCD1Q658N2 575 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 CXCL17Q6UXB2 119 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 PIGZQ86VD9 579 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 TAX1BP1Q86VP1 789 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 IGDCC3Q8IVU1 814 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 PDIK1LQ8N165 341 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 CCDC185Q8N715 623 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 NRDE2Q9H7Z3 1164 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 ZFYVE28Q9HCC9 887 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 GTF2IRD1Q9UHL9 959 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 SLC24A2Q9UI40 661 aa21.1■□□□□ 0.97
CLN3-230ENST00000568076 BCLAF3A2AJT9 711 aaKnown RBP21.09■□□□□ 0.97
CLN3-230ENST00000568076 ZNF487B1APH4 448 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 PIAS1O75925 651 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 SLC10A3P09131 477 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 NR1H3Q13133 447 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 NBPF20Q3BBV1 942 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 GDF6Q6KF10 455 aaPredicted RBP21.09■□□□□ 0.97
CLN3-230ENST00000568076 C3orf62Q6ZUJ4 267 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 CCDC197Q8NCU1 140 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 KCTD15Q96SI1 283 aaPredicted RBP21.09■□□□□ 0.97
CLN3-230ENST00000568076 ELAC2Q9BQ52 826 aaKnown RBP21.09■□□□□ 0.97
CLN3-230ENST00000568076 DUSP16Q9BY84 665 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 DHX35Q9H5Z1 703 aaKnown RBP21.09■□□□□ 0.97
CLN3-230ENST00000568076 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.09■□□□□ 0.97
CLN3-230ENST00000568076 ST3GAL5Q9UNP4 418 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 AP4E1Q9UPM8 1137 aa21.09■□□□□ 0.97
CLN3-230ENST00000568076 GABRDO14764 452 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 RARBP10826 455 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 PTPN1P18031 435 aaKnown RBP21.08■□□□□ 0.97
CLN3-230ENST00000568076 MLH1P40692 756 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 GJA9P57773 515 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 ADIGQ0VDE8 80 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 SLC10A2Q12908 348 aaPredicted RBP21.08■□□□□ 0.97
CLN3-230ENST00000568076 RASA2Q15283 850 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 PPM1EQ8WY54 764 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 MTG1Q9BT17 334 aaPredicted RBP21.08■□□□□ 0.97
CLN3-230ENST00000568076 PAK5Q9P286 719 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 TRPV2Q9Y5S1 764 aa21.08■□□□□ 0.97
CLN3-230ENST00000568076 SPAG7O75391 227 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 PGK1P00558 417 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 CTSHP09668 335 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 CYBAP13498 195 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 GEMIN4P57678 1058 aaKnown RBP21.08■□□□□ 0.96
CLN3-230ENST00000568076 GBE1Q04446 702 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 DEFB106AQ8N104 65 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 AGGF1Q8N302 714 aaeCLIP21.08■□□□□ 0.96
CLN3-230ENST00000568076 MICALL1Q8N3F8 863 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 FBF1Q8TES7 1133 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 DHRS4Q9BTZ2 278 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 TSPYL2Q9H2G4 693 aaPredicted RBP21.08■□□□□ 0.96
CLN3-230ENST00000568076 TRABDQ9H4I3 376 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 ACSS3Q9H6R3 686 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 PPCSQ9HAB8 311 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 RAB6BQ9NRW1 208 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 FAM105AQ9NUU6 356 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 FGFR1OP2Q9NVK5 253 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 NKIRAS1Q9NYS0 192 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 PSMC3IPQ9P2W1 217 aaPredicted RBP21.08■□□□□ 0.96
CLN3-230ENST00000568076 CHMP2BQ9UQN3 213 aa21.08■□□□□ 0.96
CLN3-230ENST00000568076 FAM47DPA6NHR8 397 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 CHADO15335 359 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 ZBED1O96006 694 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 CHRNA1P02708 482 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 KRT15P19012 456 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 PHBP35232 272 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 ELK3P41970 407 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 MATKP42679 507 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 WDR4P57081 412 aaKnown RBP21.07■□□□□ 0.96
CLN3-230ENST00000568076 PITX1P78337 314 aaPredicted RBP21.07■□□□□ 0.96
CLN3-230ENST00000568076 EFHC1Q5JVL4 640 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 OTUD1Q5VV17 481 aaPredicted RBP21.07■□□□□ 0.96
CLN3-230ENST00000568076 ARHGEF18Q6ZSZ5 1173 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 CCDC121Q6ZUS5 278 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 PYROXD2Q8N2H3 581 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 CCT6BQ92526 530 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 ARHGAP39Q9C0H5 1083 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 MIOSQ9NXC5 875 aa21.07■□□□□ 0.96
CLN3-230ENST00000568076 SAMD15Q9P1V8 674 aa21.07■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms