RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 TSSK1BQ9BXA7 367 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 OSBPL1AQ9BXW6 950 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 CISHQ9NSE2 258 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 ZFATQ9P243 1243 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SLC17A7Q9P2U7 560 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 MTO1Q9Y2Z2 717 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 A0A0G2JND7 137 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 ABLIM1O14639 778 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 GAS2O43903 313 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 HAUS5O94927 633 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 MT-ND3P03897 115 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SMIM10L2AP0DMW4 78 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SMIM10L2BP0DMW5 78 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 RARBP10826 455 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 PSMA2P25787 234 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 POLR2BP30876 1174 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 GCKP35557 465 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 PCK1P35558 622 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 DYNLT1P63172 113 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 PURAQ00577 322 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SLC25A11Q02978 314 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 OVGP1Q12889 678 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 HIC1Q14526 733 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 MFSD10Q14728 455 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 TAZQ16635 292 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SGSM1Q2NKQ1 1148 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 CDCA2Q69YH5 1023 aaPredicted RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 MTHFD1LQ6UB35 978 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 CHSY1Q86X52 802 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 BRSK2Q8IWQ3 736 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 RNF149Q8NC42 400 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 TTC8Q8TAM2 541 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 SNRNP27Q8WVK2 155 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 NSL1Q96IY1 281 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 PPP1R16BQ96T49 567 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 MIPEPQ99797 713 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 CADM1Q9BY67 442 aaKnown RBP13.78□□□□□ -0.2
VPS4A-204ENST00000566354 NIF3L1Q9GZT8 377 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 STOML1Q9UBI4 398 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 HEY2Q9UBP5 337 aa13.78□□□□□ -0.2
VPS4A-204ENST00000566354 COL1A2P08123 1366 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 IQANK1A0A1B0GTG1 560 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 SIGLEC16A6NMB1 481 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 H0Y3Z8 333 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 LPXNO60711 386 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 GNRH1P01148 92 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 EDN1P05305 212 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 DHRS4L1P0CG22 281 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 KRT3P12035 628 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 ACADSP16219 412 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 KDELR1P24390 212 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 RFC1P35251 1148 aaPredicted RBP13.77□□□□□ -0.21
VPS4A-204ENST00000566354 PSEN2P49810 448 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 ARFIP2P53365 341 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 BBS9Q3SYG4 887 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 ZNF394Q53GI3 561 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 CYP4A22Q5TCH4 519 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 MAP3K21Q5TCX8 1036 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 LINC01465Q8N7H1 131 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 FNIP1Q8TF40 1166 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 PTCD3Q96EY7 689 aaKnown RBP13.77□□□□□ -0.21
VPS4A-204ENST00000566354 NLRP4Q96MN2 994 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 WDR83Q9BRX9 315 aaKnown RBP13.77□□□□□ -0.21
VPS4A-204ENST00000566354 ZWILCHQ9H900 591 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 XPNPEP3Q9NQH7 507 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 NUMBLQ9Y6R0 609 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 SIP14410 1827 aa13.77□□□□□ -0.21
VPS4A-204ENST00000566354 CFAP69A5D8W1 941 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 GOLGA8RI6L899 631 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 HAS3O00219 553 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 ADAMTS4O75173 837 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 LRCH4O75427 683 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 FAM163BP0C2L3 166 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 MYL6P60660 151 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 MRPS35P82673 323 aaKnown RBP13.76□□□□□ -0.21
VPS4A-204ENST00000566354 MXD4Q14582 209 aaPredicted RBP13.76□□□□□ -0.21
VPS4A-204ENST00000566354 SEZ6Q53EL9 994 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 SCARA3Q6AZY7 606 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 ANO7Q6IWH7 933 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 CXCL17Q6UXB2 119 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 ZPBP2Q6X784 338 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 PXYLP1Q8TE99 480 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 DNAJC9Q8WXX5 260 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 BEGAINQ9BUH8 593 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 C10orf88Q9H8K7 445 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 XPO7Q9UIA9 1087 aaKnown RBP13.76□□□□□ -0.21
VPS4A-204ENST00000566354 TRIM17Q9Y577 477 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 IKBKGQ9Y6K9 419 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 GSC2O15499 205 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 PIAS1O75925 651 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 IL1BP01584 269 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 VTNP04004 478 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 HARSP12081 509 aaKnown RBP13.76□□□□□ -0.21
VPS4A-204ENST00000566354 KRT72Q14CN4 511 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 SMTNL2Q2TAL5 461 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 KHDC1Q4VXA5 237 aaKnown RBP13.76□□□□□ -0.21
VPS4A-204ENST00000566354 LRRC6Q86X45 466 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 TFAP2BQ92481 460 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 PTPRN2Q92932 1015 aa13.76□□□□□ -0.21
VPS4A-204ENST00000566354 KLF6Q99612 283 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms