RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 KLHL11Q9NVR0 708 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 USP18Q9UMW8 372 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 IRAK3Q9Y616 596 aa31.94■■■□□ 2.7
CTCF-203ENST00000566078 PDE2AO00408 941 aaPredicted RBP31.93■■■□□ 2.7
CTCF-203ENST00000566078 PRRG1O14668 218 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 YWHAQP27348 245 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 IL1R2P27930 398 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 ELF1P32519 619 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 AADACL2Q6P093 401 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 POLNQ7Z5Q5 900 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 CEP295NLQ96MC4 621 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 KLHL5Q96PQ7 755 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 NPY6RQ99463 290 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 EMILIN2Q9BXX0 1053 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 PBX4Q9BYU1 374 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 COMMD8Q9NX08 183 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 RNF14Q9UBS8 474 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 OBSL1O75147 1896 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 GRM6O15303 877 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 TRUB2O95900 331 aaKnown RBP31.93■■■□□ 2.7
CTCF-203ENST00000566078 ADH1AP07327 375 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 KRT7P08729 469 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 PYGMP11217 842 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 PAFAH1B1P43034 410 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 HDAC4P56524 1084 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 ERVK-21P61565 698 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 PITX1P78337 314 aaPredicted RBP31.93■■■□□ 2.7
CTCF-203ENST00000566078 ZFYVE27Q5T4F4 411 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 OTUD1Q5VV17 481 aaPredicted RBP31.93■■■□□ 2.7
CTCF-203ENST00000566078 STRADAQ7RTN6 431 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 RASGEF1CQ8N431 466 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 LRRN4CLQ8ND94 238 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 FBXO32Q969P5 355 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 PEBP4Q96S96 227 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 NCAPGQ9BPX3 1015 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 MAFFQ9ULX9 164 aa31.93■■■□□ 2.7
CTCF-203ENST00000566078 RANBP2P49792 3224 aaKnown RBP31.92■■■□□ 2.7
CTCF-203ENST00000566078 HSFX4A0A1B0GTS1 333 aaPredicted RBP31.92■■■□□ 2.7
CTCF-203ENST00000566078 HSFX3A0A1B0GWH4 333 aaPredicted RBP31.92■■■□□ 2.7
CTCF-203ENST00000566078 A0A1W2PQH9 124 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 C2orf71A6NGG8 1288 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 HIDE1A8MVS5 230 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 KRT1P04264 644 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 SMTNL2Q2TAL5 461 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 ATP13A4Q4VNC1 1196 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 BTBD8Q5XKL5 378 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 SCYL2Q6P3W7 929 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 SCD5Q86SK9 330 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 TCEAL8Q8IYN2 117 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 ACTRT1Q8TDG2 376 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 NT5C3BQ969T7 300 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 ACSF2Q96CM8 615 aaPredicted RBP31.92■■■□□ 2.7
CTCF-203ENST00000566078 NMUR1Q9HB89 426 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 DDX56Q9NY93 547 aaKnown RBP31.92■■■□□ 2.7
CTCF-203ENST00000566078 GMIPQ9P107 970 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 CALCOCO1Q9P1Z2 691 aa31.92■■■□□ 2.7
CTCF-203ENST00000566078 FAM92AA1XBS5 289 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 PGRMC1O00264 195 aaKnown RBP31.91■■■□□ 2.7
CTCF-203ENST00000566078 TGM5O43548 720 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 PRPSAP2O60256 369 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 ALDH1A3P47895 512 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 PGFP49763 221 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 SLC7A14Q8TBB6 771 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 ABCC13Q9NSE7 274 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 ANAPC1Q9H1A4 1944 aa31.91■■■□□ 2.7
CTCF-203ENST00000566078 M0QYT0 321 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 FSCN2O14926 492 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 SPATA31D3P0C874 917 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 ATXN1P54253 815 aaKnown RBP31.9■■■□□ 2.7
CTCF-203ENST00000566078 KCNT1Q5JUK3 1230 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 SPATA31D4Q6ZUB0 917 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 BEND5Q7L4P6 421 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 MON1AQ86VX9 555 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 ARHGAP18Q8N392 663 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 MRPL43Q8N983 215 aaKnown RBP31.9■■■□□ 2.7
CTCF-203ENST00000566078 EXD1Q8NHP7 514 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 NKX2-4Q9H2Z4 354 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 RRN3Q9NYV6 651 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 MAGED2Q9UNF1 606 aaPredicted RBP31.9■■■□□ 2.7
CTCF-203ENST00000566078 INSL5Q9Y5Q6 135 aa31.9■■■□□ 2.7
CTCF-203ENST00000566078 SYNJ2BP-COX16A0A087WUM0 186 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 LPXNO60711 386 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 KLRC2P26717 231 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 GPM6BQ13491 265 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 RAB30Q15771 203 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 BNIPLQ7Z465 357 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 CCDC50Q8IVM0 306 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 ADAM32Q8TC27 787 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 MICAL1Q8TDZ2 1067 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 COX16Q9P0S2 106 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 MSRAQ9UJ68 235 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 DENND4CQ5VZ89 1909 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 CTAGE15A4D2H0 777 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 CTAGE8P0CG41 777 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 RDXP35241 583 aaKnown RBP31.89■■■□□ 2.7
CTCF-203ENST00000566078 TWF1Q12792 350 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 TAF10Q12962 218 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 ODF2Q5BJF6 829 aa31.89■■■□□ 2.7
CTCF-203ENST00000566078 CYP4V2Q6ZWL3 525 aaPredicted RBP31.89■■■□□ 2.7
CTCF-203ENST00000566078 CTAGE6Q86UF2 777 aa31.89■■■□□ 2.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms