RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 EDEM2Q9BV94 578 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 NT5C1AQ9BXI3 368 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 NACA2Q9H009 215 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 PNPLA8Q9NP80 782 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 POLMQ9NP87 494 aaPredicted RBP18.08■□□□□ 0.49
CLN3-216ENST00000565316 OSER1Q9NX31 292 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 HCN2Q9UL51 889 aa18.08■□□□□ 0.49
CLN3-216ENST00000565316 LNP1A1A4G5 178 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 TBC1D3BA6NDS4 549 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 CILPO75339 1184 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 TRIM49P0CI25 452 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 TRIM49CP0CI26 452 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 TRIM21P19474 475 aaKnown RBP18.07■□□□□ 0.48
CLN3-216ENST00000565316 ADORA2BP29275 332 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 GCLMP48507 274 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 MAP7D1Q3KQU3 841 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 ZCWPW2Q504Y3 356 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 KLHDC10Q6PID8 442 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 NAT16Q8N8M0 369 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 TERB1Q8NA31 727 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 CCDC47Q96A33 483 aaKnown RBP18.07■□□□□ 0.48
CLN3-216ENST00000565316 CYFIP2Q96F07 1278 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 IMPG2Q9BZV3 1241 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 NIF3L1Q9GZT8 377 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 STARD13Q9Y3M8 1113 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 PCDHA5Q9Y5H7 936 aa18.07■□□□□ 0.48
CLN3-216ENST00000565316 A0A1W2PQ27 194 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 A0A1W2PQ64 194 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 A0A1W2PQD8 194 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 CYP26A1O43174 497 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 KCNK5O95279 499 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 IRF1P10914 325 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 RPL13P26373 211 aaKnown RBP18.06■□□□□ 0.48
CLN3-216ENST00000565316 ATP5C1P36542 298 aaKnown RBP18.06■□□□□ 0.48
CLN3-216ENST00000565316 ANO4Q32M45 955 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 SPDYCQ5MJ68 293 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 KRBA2Q6ZNG9 492 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 CYP2U1Q7Z449 544 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 TRMT11Q7Z4G4 463 aaKnown RBP18.06■□□□□ 0.48
CLN3-216ENST00000565316 FAM186BQ8IYM0 893 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 ZNF276Q8N554 614 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 NMUR1Q9HB89 426 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 ZDHHC4Q9NPG8 344 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 UTP3Q9NQZ2 479 aaKnown RBP eCLIP18.06■□□□□ 0.486e-9■■■■■ 134.6
CLN3-216ENST00000565316 MTPAPQ9NVV4 582 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-216ENST00000565316 MARK1Q9P0L2 795 aa18.06■□□□□ 0.48
CLN3-216ENST00000565316 MBD1Q9UIS9 605 aaPredicted RBP18.06■□□□□ 0.48
CLN3-216ENST00000565316 C4orf47A7E2U8 309 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 KHNYNO15037 678 aaKnown RBP18.05■□□□□ 0.48
CLN3-216ENST00000565316 TRIM24O15164 1050 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 CACNG3O60359 315 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 KRT13P13646 458 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 ACO1P21399 889 aaKnown RBP18.05■□□□□ 0.48
CLN3-216ENST00000565316 GTF2H1P32780 548 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 PSMC2P35998 433 aaKnown RBP18.05■□□□□ 0.48
CLN3-216ENST00000565316 KIF11P52732 1056 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 SHC2P98077 582 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 ADAM9Q13443 819 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 BYSLQ13895 437 aaKnown RBP18.05■□□□□ 0.48
CLN3-216ENST00000565316 NUDT18Q6ZVK8 323 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 LPCAT2Q7L5N7 544 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 TTC30AQ86WT1 665 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 ZNF513Q8N8E2 541 aaPredicted RBP18.05■□□□□ 0.48
CLN3-216ENST00000565316 HMGB4Q8WW32 186 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 RLN3Q8WXF3 142 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 FAXDC2Q96IV6 333 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 SPACA7Q96KW9 195 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 TMEM8AQ9HCN3 771 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 WDR35Q9P2L0 1181 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 EVLQ9UI08 416 aaPredicted RBP18.05■□□□□ 0.48
CLN3-216ENST00000565316 MAPK8IP1Q9UQF2 711 aa18.05■□□□□ 0.48
CLN3-216ENST00000565316 NUP205Q92621 2012 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 A0A1W2PQH9 124 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 TCRBV21S2A2A0A5A6 115 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 RARGP13631 454 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 KCNA4P22459 653 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 DHPSP49366 369 aaPredicted RBP18.04■□□□□ 0.48
CLN3-216ENST00000565316 GOLGA8FQ08AF8 430 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 GOLGA8DPQ0D2H9 430 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 C10orf76Q5T2E6 689 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 GRAMD4Q6IC98 578 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 Q6ZNB5 142 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 CCDC186Q7Z3E2 898 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 SCD5Q86SK9 330 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 FRMD1Q8N878 549 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 DUSP16Q9BY84 665 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 SCAND2PQ9GZW5 306 aaPredicted RBP18.04■□□□□ 0.48
CLN3-216ENST00000565316 GOLPH3LQ9H4A5 285 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 CD248Q9HCU0 757 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 BCCIPQ9P287 314 aaKnown RBP eCLIP18.04■□□□□ 0.48
CLN3-216ENST00000565316 DNMT3LQ9UJW3 386 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 ANGPTL2Q9UKU9 493 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 USP3Q9Y6I4 520 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 THADAQ6YHU6 1953 aa18.04■□□□□ 0.48
CLN3-216ENST00000565316 MYO18AQ92614 2054 aaKnown RBP18.03■□□□□ 0.48
CLN3-216ENST00000565316 PATE3B3GLJ2 98 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 CDX4O14627 284 aaPredicted RBP18.03■□□□□ 0.48
CLN3-216ENST00000565316 TYRP14679 529 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 NTSR1P30989 418 aa18.03■□□□□ 0.48
CLN3-216ENST00000565316 PLA2G4AP47712 749 aa18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms