RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 SLC2A13Q96QE2 648 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 NMUR1Q9HB89 426 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 ZMYM5Q9UJ78 669 aa21.61■■□□□ 1.05
CLN3-212ENST00000564574 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.61■■□□□ 1.05
CLN3-212ENST00000564574 DENND4AQ7Z401 1863 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 CLUHO75153 1309 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 CDH23Q9H251 3354 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 A0A0A6YYK5 440 aaPredicted RBP21.6■■□□□ 1.05
CLN3-212ENST00000564574 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP21.6■■□□□ 1.05
CLN3-212ENST00000564574 BTNL10A8MVZ5 291 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 DLL1O00548 723 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 DDX6P26196 483 aaKnown RBP eCLIP21.6■■□□□ 1.05
CLN3-212ENST00000564574 MTHFRP42898 656 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 CCDC85BQ15834 202 aaPredicted RBP21.6■■□□□ 1.05
CLN3-212ENST00000564574 PRSS36Q5K4E3 855 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 DCUN1D2Q6PH85 259 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 HFE2Q6ZVN8 426 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 PHLDB2Q86SQ0 1253 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 TMEM150AQ86TG1 271 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 FEZF2Q8TBJ5 459 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 TRIM44Q96DX7 344 aaPredicted RBP21.6■■□□□ 1.05
CLN3-212ENST00000564574 UBE2ZQ9H832 354 aaPredicted RBP21.6■■□□□ 1.05
CLN3-212ENST00000564574 OLA1Q9NTK5 396 aaKnown RBP21.6■■□□□ 1.05
CLN3-212ENST00000564574 RRN3Q9NYV6 651 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 CD207Q9UJ71 328 aa21.6■■□□□ 1.05
CLN3-212ENST00000564574 CAPN9O14815 690 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 RARGP13631 454 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 KIF5AQ12840 1032 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 SKIV2LQ15477 1246 aaKnown RBP21.59■■□□□ 1.05
CLN3-212ENST00000564574 TAF5Q15542 800 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 ARHGAP15Q53QZ3 475 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 HECTD3Q5T447 861 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 ZNF662Q6ZS27 426 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 SMRP1Q8NCR6 262 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 SHKBP1Q8TBC3 707 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 CALR3Q96L12 384 aaKnown RBP21.59■■□□□ 1.05
CLN3-212ENST00000564574 NECTIN4Q96NY8 510 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 NUP85Q9BW27 656 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 APOL5Q9BWW9 433 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 TSGA10Q9BZW7 698 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 ATXN3LQ9H3M9 355 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 WDR6Q9NNW5 1121 aaKnown RBP21.59■■□□□ 1.05
CLN3-212ENST00000564574 MTPAPQ9NVV4 582 aaKnown RBP eCLIP21.59■■□□□ 1.05
CLN3-212ENST00000564574 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP21.59■■□□□ 1.05
CLN3-212ENST00000564574 CTTNBP2NLQ9P2B4 639 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 LCMT1Q9UIC8 334 aa21.59■■□□□ 1.05
CLN3-212ENST00000564574 A0A1W2PRU2 124 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 ZSCAN12O43309 604 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 GRAP2O75791 330 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 MTA2O94776 668 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 ABL1P00519 1130 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 NCAM1P13591 858 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 NOS2P35228 1153 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 CCR2P41597 374 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 MATKP42679 507 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 NTHL1P78549 312 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 DEFB106AQ8N104 65 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 ZNF564Q8TBZ8 553 aaPredicted RBP21.58■■□□□ 1.05
CLN3-212ENST00000564574 FNIP1Q8TF40 1166 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 RNF139Q8WU17 664 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 MCEEQ96PE7 176 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 DDX23Q9BUQ8 820 aaKnown RBP21.58■■□□□ 1.05
CLN3-212ENST00000564574 TMEM51Q9NW97 253 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 OSER1Q9NX31 292 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 STAP1Q9ULZ2 295 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 COG5Q9UP83 839 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 PPP2R2CQ9Y2T4 447 aa21.58■■□□□ 1.05
CLN3-212ENST00000564574 MRPS23Q9Y3D9 190 aaKnown RBP21.58■■□□□ 1.05
CLN3-212ENST00000564574 TMEM191CA6NGB0 347 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 C2CD4BA6NLJ0 364 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 KRT86O43790 486 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 MOSPD3O75425 235 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 OAS1P00973 400 aaKnown RBP21.57■■□□□ 1.04
CLN3-212ENST00000564574 FYNP06241 537 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 DESP17661 470 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 PGFP49763 221 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 HADHBP55084 474 aaKnown RBP21.57■■□□□ 1.04
CLN3-212ENST00000564574 RNASE9P60153 205 aaKnown RBP21.57■■□□□ 1.04
CLN3-212ENST00000564574 SLC5A9Q2M3M2 681 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 MSANTD2Q6P1R3 559 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 KLHDC10Q6PID8 442 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 JOSD2Q8TAC2 188 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 SLC35G2Q8TBE7 412 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 PPM1EQ8WY54 764 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 HLA-CQ95604 372 aa21.57■■□□□ 1.04
CLN3-212ENST00000564574 NUP210Q8TEM1 1887 aaPredicted RBP21.57■■□□□ 1.04
CLN3-212ENST00000564574 HELZP42694 1942 aaKnown RBP21.57■■□□□ 1.04
CLN3-212ENST00000564574 RCCD1A6NED2 376 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 DPYSL4O14531 572 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 CCP110O43303 1012 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 TLR5O60602 858 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 GJB6O95452 261 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 GPD1P21695 349 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 FSHRP23945 695 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 SDC4P31431 198 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 RFC1P35251 1148 aaPredicted RBP21.56■■□□□ 1.04
CLN3-212ENST00000564574 FLT3P36888 993 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 PTPN9P43378 593 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 CYP4F8P98187 520 aa21.56■■□□□ 1.04
CLN3-212ENST00000564574 DCAF6Q58WW2 860 aa21.56■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms