RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 ZNF720Q7Z2F6 126 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 SFR1Q86XK3 245 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 KRI1Q8N9T8 703 aaKnown RBP7.78□□□□□ -1.16
VPS4A-203ENST00000564399 ZSWIM2Q8NEG5 633 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 PDZD8Q8NEN9 1154 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 ENGASEQ8NFI3 743 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 BAHD1Q8TBE0 780 aaPredicted RBP7.78□□□□□ -1.16
VPS4A-203ENST00000564399 MYCBPAPQ8TBZ2 947 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 KBTBD7Q8WVZ9 684 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 DNASE2BQ8WZ79 361 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 FBXO32Q969P5 355 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 HPDLQ96IR7 371 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 ANKRD36BP1Q96IX9 119 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 GABRG3Q99928 467 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 BBS2Q9BXC9 721 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 MTMR12Q9C0I1 747 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 SNX25Q9H3E2 840 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 ST6GALNAC4Q9H4F1 302 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 PDE11AQ9HCR9 933 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 BLOC1S4Q9NUP1 217 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 WSB2Q9NYS7 404 aaPredicted RBP7.78□□□□□ -1.16
VPS4A-203ENST00000564399 CHORDC1Q9UHD1 332 aaPredicted RBP7.78□□□□□ -1.16
VPS4A-203ENST00000564399 EIF2B4Q9UI10 523 aaKnown RBP7.78□□□□□ -1.16
VPS4A-203ENST00000564399 SIX4Q9UIU6 781 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 BTBD3Q9Y2F9 522 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 NFE2L3Q9Y4A8 694 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 RAI2Q9Y5P3 530 aa7.78□□□□□ -1.16
VPS4A-203ENST00000564399 METTL12A8MUP2 240 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 PRRT4C9JH25 899 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 PLK4O00444 970 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 GFRA2O00451 464 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 RRP8O43159 456 aaKnown RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 SLC26A4O43511 780 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 TNFSF14O43557 240 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 DKK1O94907 266 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 RTN3O95197 1032 aaPredicted RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 TNNC2P02585 160 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 TYRP14679 529 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 WARSP23381 471 aaKnown RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 DDIT3P35638 169 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 GNL1P36915 607 aaPredicted RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 DGKGP49619 791 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 CSNK1EP49674 416 aaKnown RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 SEMG2Q02383 582 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 ARL6IP4Q66PJ3 421 aaKnown RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 DHRS13Q6UX07 377 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 TPGS1Q6ZTW0 290 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 DYMQ7RTS9 669 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 SYCP3Q8IZU3 236 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 NUP93Q8N1F7 819 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 CADM4Q8NFZ8 388 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 OR6B3Q8NGW1 331 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 CXorf38Q8TB03 319 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 SNX19Q92543 992 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 RAD54LQ92698 747 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 WBP2Q969T9 261 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 HVCN1Q96D96 273 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 NXPE2Q96DL1 559 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 ZFRQ96KR1 1074 aaKnown RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 AK8Q96MA6 479 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 FCRL3Q96P31 734 aaPredicted RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 ACCSQ96QU6 501 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 ZNF518BQ9C0D4 1074 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 ELOVL4Q9GZR5 314 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 PCIF1Q9H4Z3 704 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 CCSER2Q9H7U1 834 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 MRPL44Q9H9J2 332 aaKnown RBP7.77□□□□□ -1.17
VPS4A-203ENST00000564399 CD248Q9HCU0 757 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 ITM2CQ9NQX7 267 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 TBC1D7Q9P0N9 293 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 WDR35Q9P2L0 1181 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 PCDHGB2Q9Y5G2 931 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 AK5Q9Y6K8 562 aa7.77□□□□□ -1.17
VPS4A-203ENST00000564399 TENM4Q6N022 2769 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 CYSRT1A8MQ03 144 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 E9PAM4 449 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 J3QKU1 62 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 CLDN5O00501 218 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 CACNG3O60359 315 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 SYNCRIPO60506 623 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 PRPF6O94906 941 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 ACADMP11310 421 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 JUPP14923 745 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 PTPN1P18031 435 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 GARTP22102 1010 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 OXTRP30559 389 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 EIF2S3P41091 472 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 GRK6P43250 576 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 TPMTP51580 245 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 CACNA2D1P54289 1103 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 BNC1Q01954 994 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 KCNA1Q09470 495 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 SF3A1Q15459 793 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 TEAD4Q15561 434 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 SMAD1Q15797 465 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 KIF19Q2TAC6 998 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 FUT11Q495W5 492 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 C6orf118Q5T5N4 469 aa7.76□□□□□ -1.17
VPS4A-203ENST00000564399 LARP1BQ659C4 914 aaKnown RBP7.76□□□□□ -1.17
VPS4A-203ENST00000564399 DBX2Q6ZNG2 339 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms