RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 ITPKAP23677 461 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 ADORA2BP29275 332 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 ASPAP45381 313 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 DNM1Q05193 864 aaKnown RBP17.82■□□□□ 0.44
CLN3-211ENST00000564091 BYSLQ13895 437 aaKnown RBP17.82■□□□□ 0.44
CLN3-211ENST00000564091 C1orf220Q5T0J3 134 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 LYSMD4Q5XG99 296 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 CEP135Q66GS9 1140 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 HTR3DQ70Z44 454 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 KCNV2Q8TDN2 545 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 SNX21Q969T3 373 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 TWNKQ96RR1 684 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 ACOX2Q99424 681 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 DUSP9Q99956 384 aaKnown RBP17.82■□□□□ 0.44
CLN3-211ENST00000564091 KLF16Q9BXK1 252 aaPredicted RBP17.82■□□□□ 0.44
CLN3-211ENST00000564091 FBXO44Q9H4M3 255 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 FSCN3Q9NQT6 498 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 DNAJC17Q9NVM6 304 aaKnown RBP17.82■□□□□ 0.44
CLN3-211ENST00000564091 OSER1Q9NX31 292 aa17.82■□□□□ 0.44
CLN3-211ENST00000564091 ANAPC1Q9H1A4 1944 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 C1QTNF9BB2RNN3 333 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 NEDD8-MDP1E9PL57 170 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 MDM4O15151 490 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 CYP26A1O43174 497 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 ASS1P00966 412 aaKnown RBP17.81■□□□□ 0.44
CLN3-211ENST00000564091 HLA-DRAP01903 254 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 PROS1P07225 676 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 C1QTNF9P0C862 333 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 CEACAM1P13688 526 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 HOXB2P14652 356 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 GABRG2P18507 467 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 CSRP1P21291 193 aaKnown RBP17.81■□□□□ 0.44
CLN3-211ENST00000564091 LMAN2Q12907 356 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 PREPLQ4J6C6 727 aaPredicted RBP17.81■□□□□ 0.44
CLN3-211ENST00000564091 EGFLAMQ63HQ2 1017 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 GRAMD4Q6IC98 578 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 TPGS1Q6ZTW0 290 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 TRMT11Q7Z4G4 463 aaKnown RBP17.81■□□□□ 0.44
CLN3-211ENST00000564091 UNC93AQ86WB7 457 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 TMEM174Q8WUU8 243 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 NUSAP1Q9BXS6 441 aaKnown RBP17.81■□□□□ 0.44
CLN3-211ENST00000564091 NMUR1Q9HB89 426 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 TLR8Q9NR97 1041 aaKnown RBP17.81■□□□□ 0.44
CLN3-211ENST00000564091 CALCOCO1Q9P1Z2 691 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 PILRBQ9UKJ0 227 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 NUDT5Q9UKK9 219 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 RCOR1Q9UKL0 485 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 STARD13Q9Y3M8 1113 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 GON4LQ3T8J9 2241 aa17.81■□□□□ 0.44
CLN3-211ENST00000564091 A0A1W2PQF6 199 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 PDXKO00764 312 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 FAM200BP0CF97 657 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 PDIA4P13667 645 aaKnown RBP17.8■□□□□ 0.44
CLN3-211ENST00000564091 ENGP17813 658 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 ACO1P21399 889 aaKnown RBP17.8■□□□□ 0.44
CLN3-211ENST00000564091 NTSR1P30989 418 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 ATP5C1P36542 298 aaKnown RBP17.8■□□□□ 0.44
CLN3-211ENST00000564091 PIK3CAP42336 1068 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 RPL6Q02878 288 aaKnown RBP17.8■□□□□ 0.44
CLN3-211ENST00000564091 SPDYCQ5MJ68 293 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 CLEC20AQ6ZU45 233 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 TOGARAM2Q6ZUX3 1019 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 NUDT18Q6ZVK8 323 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 TMC2Q8TDI7 906 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 TAF4BQ92750 862 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 BHMTQ93088 406 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 HNRNPABQ99729 332 aaKnown RBP17.8■□□□□ 0.44
CLN3-211ENST00000564091 BBS2Q9BXC9 721 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 APOBEC3GQ9HC16 384 aaKnown RBP17.8■□□□□ 0.44
CLN3-211ENST00000564091 CYLDQ9NQC7 956 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 RALYQ9UKM9 306 aaKnown RBP17.8■□□□□ 0.44
CLN3-211ENST00000564091 CFAP45Q9UL16 551 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 WASF3Q9UPY6 502 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 SCML2Q9UQR0 700 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 EML5Q05BV3 1969 aa17.8■□□□□ 0.44
CLN3-211ENST00000564091 A0A1B0GVL5 298 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 A0A1W2PQH9 124 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 PRRT4C9JH25 899 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 HHLA1C9JL84 531 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 CFIP05156 583 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 HSP90AA1P07900 732 aaKnown RBP17.79■□□□□ 0.44
CLN3-211ENST00000564091 TYRP14679 529 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 ATL3Q6DD88 541 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 KIAA1211LQ6NV74 962 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 SLC23A3Q6PIS1 610 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 UNQ6494/PRO21346Q6UXR6 183 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 CHPFQ8IZ52 775 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 SPRYD3Q8NCJ5 442 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 CYFIP2Q96F07 1278 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 XPO6Q96QU8 1125 aaKnown RBP17.79■□□□□ 0.44
CLN3-211ENST00000564091 LSM7Q9UK45 103 aaKnown RBP17.79■□□□□ 0.44
CLN3-211ENST00000564091 FRMD4BQ9Y2L6 1034 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 RAD54BQ9Y620 910 aa17.79■□□□□ 0.44
CLN3-211ENST00000564091 IGF2RP11717 2491 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 IKBKBO14920 756 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 AP5Z1O43299 807 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 CACNG3O60359 315 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 TRIM49P0CI25 452 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 TRIM49CP0CI26 452 aa17.78■□□□□ 0.44
CLN3-211ENST00000564091 RARGP13631 454 aa17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms