RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PLD1Q13393 1074 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 PON2Q15165 354 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 CSRP2Q16527 193 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 SLC18A3Q16572 532 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 ARHGAP29Q52LW3 1261 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 ZNF394Q53GI3 561 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 SGO2Q562F6 1265 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 CCDC122Q5T0U0 273 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 GAREM2Q75VX8 874 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 CEP68Q76N32 757 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 LONP2Q86WA8 852 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 FAM160A2Q8N612 972 aaPredicted RBP12.43□□□□□ -0.42
LDLR-212ENST00000560467 CXorf38Q8TB03 319 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 E2F7Q96AV8 911 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 MSANTD3Q96H12 275 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 TMEM209Q96SK2 561 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 OXCT2Q9BYC2 517 aaPredicted RBP12.43□□□□□ -0.42
LDLR-212ENST00000560467 GPR88Q9GZN0 384 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 MIS12Q9H081 205 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 SMYD3Q9H7B4 428 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 C8orf33Q9H7E9 229 aaPredicted RBP12.43□□□□□ -0.42
LDLR-212ENST00000560467 ARHGAP20Q9P2F6 1191 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 HESX1Q9UBX0 185 aa12.43□□□□□ -0.42
LDLR-212ENST00000560467 CACNA1GO43497 2377 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 MTMR11A4FU01 709 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 OR6C75A6NL08 312 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 KRT86O43790 486 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 PNMA6AP0CW24 399 aaPredicted RBP12.42□□□□□ -0.42
LDLR-212ENST00000560467 CLCN1P35523 988 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 RAP1GAPP47736 663 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 ALDH1A3P47895 512 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 NDST1P52848 882 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 MLLT6P55198 1093 aaPredicted RBP12.42□□□□□ -0.42
LDLR-212ENST00000560467 CDH8P55286 799 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 INCA1Q0VD86 236 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 GPR17Q13304 367 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 MAPRE1Q15691 268 aaKnown RBP12.42□□□□□ -0.42
LDLR-212ENST00000560467 CCDC6Q16204 474 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 SOWAHAQ2M3V2 549 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 GPR158Q5T848 1215 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 TAF3Q5VWG9 929 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 OVOS1Q6IE37 1185 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 ALKBH5Q6P6C2 394 aaKnown RBP12.42□□□□□ -0.42
LDLR-212ENST00000560467 SLC47A2Q86VL8 602 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 TMEM35BQ8NCS4 154 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 ELMO3Q96BJ8 720 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 TRIM11Q96F44 468 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 ZNF518BQ9C0D4 1074 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 SMG9Q9H0W8 520 aaKnown RBP12.42□□□□□ -0.42
LDLR-212ENST00000560467 KCNF1Q9H3M0 494 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 ATXN3LQ9H3M9 355 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 AJAP1Q9UKB5 411 aaPredicted RBP12.42□□□□□ -0.42
LDLR-212ENST00000560467 CEP295Q9C0D2 2601 aa12.42□□□□□ -0.42
LDLR-212ENST00000560467 ATP8B3O60423 1300 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 TICRRQ7Z2Z1 1910 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 ESPNB1AK53 854 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 DPYSL4O14531 572 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 CILPO75339 1184 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 LSM8O95777 96 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 TUBB4AP04350 444 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 H2AFZP0C0S5 128 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 GZMAP12544 262 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 TYMPP19971 482 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 WARSP23381 471 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 GABRR2P28476 465 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 CNR2P34972 360 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 NSFP46459 744 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 PXNP49023 591 aaPredicted RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 NAP1L1P55209 391 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 CYP4F8P98187 520 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 TSPY1Q01534 308 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 GFPT1Q06210 699 aaPredicted RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 CCINQ13939 588 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 SF3A2Q15428 464 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 IFI16Q16666 785 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 DGKKQ5KSL6 1271 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 HGSNATQ68CP4 663 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 PKN3Q6P5Z2 889 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 C1orf228Q6PIY5 440 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 RAD9BQ6WBX8 426 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 H2AFVQ71UI9 128 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 ZNF571Q7Z3V5 609 aaPredicted RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 DNAJB7Q7Z6W7 309 aaPredicted RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 NOP9Q86U38 636 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 RALGPS2Q86X27 583 aaPredicted RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 TMEM139Q8IV31 216 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 PDCL2Q8N4E4 241 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 OR10T2Q8NGX3 314 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 KIAA1524Q8TCG1 905 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 EPS8L1Q8TE68 723 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 ZNF606Q8WXB4 792 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 PSMG2Q969U7 264 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 LPIN3Q9BQK8 851 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 SYNCQ9H7C4 482 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 DDX43Q9NXZ2 648 aaKnown RBP12.41□□□□□ -0.42
LDLR-212ENST00000560467 PPP2R2CQ9Y2T4 447 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 PCDHA13Q9Y5I0 950 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 SDK1Q7Z5N4 2213 aa12.41□□□□□ -0.42
LDLR-212ENST00000560467 CHD6Q8TD26 2715 aa12.4□□□□□ -0.42
LDLR-212ENST00000560467 TRIP11Q15643 1979 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms