RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 IFNKQ9P0W0 207 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 STRIP2Q9ULQ0 834 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 CPQQ9Y646 472 aa13.64□□□□□ -0.23
NEDD8-208ENST00000560427 KIF26AQ9ULI4 1882 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-208ENST00000560427 TMEM221A6NGB7 291 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 YJEFN3A6XGL0 299 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 E5RJQ4 531 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 E7ENQ6 273 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 M0R296 226 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 SLC9A3R1O14745 358 aaPredicted RBP13.63□□□□□ -0.23
NEDD8-208ENST00000560427 GPR37L1O60883 481 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 GABBR2O75899 941 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 GLI1P08151 1106 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 CFHP08603 1231 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 PGFP49763 221 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 TRIM14Q14142 442 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 C10orf120Q5SQS8 335 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 BSPRYQ5W0U4 402 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 SARM1Q6SZW1 724 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 PASD1Q8IV76 773 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 WDTC1Q8N5D0 677 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 OSCP1Q8WVF1 389 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 OTUB2Q96DC9 234 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 ZFRQ96KR1 1074 aaKnown RBP13.63□□□□□ -0.23
NEDD8-208ENST00000560427 LRRC3BQ96PB8 259 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 CPXM1Q96SM3 734 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 XPO4Q9C0E2 1151 aaKnown RBP13.63□□□□□ -0.23
NEDD8-208ENST00000560427 SMOC2Q9H3U7 446 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 EPHX3Q9H6B9 360 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 ARHGEF3Q9NR81 526 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 ASNSD1Q9NWL6 643 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 CYTH4Q9UIA0 394 aa13.63□□□□□ -0.23
NEDD8-208ENST00000560427 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.63□□□□□ -0.233e-9■■□□□ 11.5
NEDD8-208ENST00000560427 HELZP42694 1942 aaKnown RBP13.62□□□□□ -0.23
NEDD8-208ENST00000560427 E2F8A0AVK6 867 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 LRRC53A6NM62 1247 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 PRR33A8MZF0 331 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 LTFP02788 710 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 MMEP08473 750 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 SCNN1AP37088 669 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 KPNA1P52294 538 aaPredicted RBP13.62□□□□□ -0.23
NEDD8-208ENST00000560427 NOMO3P69849 1222 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 COG7P83436 770 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 FMO1Q01740 532 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 PPP1R2P3Q6NXS1 205 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 MSANTD2Q6P1R3 559 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 TOGARAM2Q6ZUX3 1019 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 ZNF397Q8NF99 534 aaPredicted RBP13.62□□□□□ -0.23
NEDD8-208ENST00000560427 CSGALNACT1Q8TDX6 532 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 RNF139Q8WU17 664 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 SYN2Q92777 582 aaPredicted RBP13.62□□□□□ -0.23
NEDD8-208ENST00000560427 ATP2A3Q93084 1043 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 FAM83CQ9BQN1 747 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 KLF16Q9BXK1 252 aaPredicted RBP13.62□□□□□ -0.23
NEDD8-208ENST00000560427 SYNCQ9H7C4 482 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 C8orf33Q9H7E9 229 aaPredicted RBP13.62□□□□□ -0.23
NEDD8-208ENST00000560427 SMPD4Q9NXE4 827 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 AIPL1Q9NZN9 384 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 TBC1D14Q9P2M4 693 aa13.62□□□□□ -0.23
NEDD8-208ENST00000560427 LSM7Q9UK45 103 aaKnown RBP13.62□□□□□ -0.23
NEDD8-208ENST00000560427 COL4A2P08572 1712 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 PAPSS1O43252 624 aaPredicted RBP13.61□□□□□ -0.23
NEDD8-208ENST00000560427 HSF2BPO75031 334 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 CYP1A1P04798 512 aaPredicted RBP13.61□□□□□ -0.23
NEDD8-208ENST00000560427 PRKCIP41743 596 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 GABRB2P47870 512 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 IFNAR2P48551 515 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 ZBED6P86452 979 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 ZXDBP98169 803 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 AMPD2Q01433 879 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 MLF2Q15773 248 aaPredicted RBP13.61□□□□□ -0.23
NEDD8-208ENST00000560427 ASIC2Q16515 512 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 PTPN20Q4JDL3 420 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 SLC44A4Q53GD3 710 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 EFHC1Q5JVL4 640 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 TMEM31Q5JXX7 168 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 SFMBT2Q5VUG0 894 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 TAF3Q5VWG9 929 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 SPECC1LQ69YQ0 1117 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 GPIHBP1Q8IV16 184 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 SCUBE3Q8IX30 993 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 SIX5Q8N196 739 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 RIN3Q8TB24 985 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 SLC20A1Q8WUM9 679 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 POPDC2Q9HBU9 364 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 DUS2Q9NX74 493 aaKnown RBP13.61□□□□□ -0.23
NEDD8-208ENST00000560427 MARCH2Q9P0N8 246 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 CFAP97Q9P2B7 532 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 ZNF510Q9Y2H8 683 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 SH3BP1Q9Y3L3 701 aa13.61□□□□□ -0.23
NEDD8-208ENST00000560427 HBS1LQ9Y450 684 aaKnown RBP13.61□□□□□ -0.23
NEDD8-208ENST00000560427 PIK3R2O00459 728 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 MAN2B1O00754 1011 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 NFATC1O95644 943 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 TBX18O95935 607 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 STARD6P59095 220 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 YWHAZP63104 245 aaKnown RBP13.6□□□□□ -0.23
NEDD8-208ENST00000560427 CENPCQ03188 943 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 ARID5AQ03989 594 aa13.6□□□□□ -0.23
NEDD8-208ENST00000560427 EFEMP1Q12805 493 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms