RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 RPL17P18621 184 aaKnown RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 KLRC2P26717 231 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 YWHAQP27348 245 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 GBP1P32455 592 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 NOS2P35228 1153 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 PCK1P35558 622 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 MATKP42679 507 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 PTPN9P43378 593 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 SLC5A3P53794 718 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 EPHB3P54753 998 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 RWDD2BP57060 319 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 DAOAP59103 153 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 TUBB4BP68371 445 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CKAP4Q07065 602 aaKnown RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 DUSP4Q13115 394 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CCDC142Q17RM4 750 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CCDC181Q5TID7 509 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 LRRC38Q5VT99 294 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 BTBD8Q5XKL5 378 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 PM20D1Q6GTS8 502 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CC2D1AQ6P1N0 951 aaPredicted RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 CCDC149Q6ZUS6 474 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 SND1Q7KZF4 910 aaKnown RBP eCLIP6.73□□□□□ -1.33
SPG11-221ENST00000560299 Q7L0L9 218 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 BEND5Q7L4P6 421 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 TADA2BQ86TJ2 420 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 MON1AQ86VX9 555 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ELMOD1Q8N336 334 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 EFHBQ8N7U6 833 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 NIPA2Q8N8Q9 360 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 MNS1Q8NEH6 495 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ZMIZ2Q8NF64 920 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 RNF139Q8WU17 664 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 POF1BQ8WVV4 589 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 RXFP2Q8WXD0 754 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 HES6Q96HZ4 224 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 BTBD6Q96KE9 485 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 SLITRK1Q96PX8 696 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CDK5RAP1Q96SZ6 601 aaKnown RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 TCF25Q9BQ70 676 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 DDX23Q9BUQ8 820 aaKnown RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 VN1R3Q9BXE9 311 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 PRDM12Q9H4Q4 367 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CYP4F11Q9HBI6 524 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ABCC13Q9NSE7 274 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 DDX56Q9NY93 547 aaKnown RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 UXTQ9UBK9 157 aaPredicted RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 TJP2Q9UDY2 1190 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 CHORDC1Q9UHD1 332 aaPredicted RBP6.73□□□□□ -1.33
SPG11-221ENST00000560299 CDC23Q9UJX2 597 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 TMEM59LQ9UK28 342 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 SCML2Q9UQR0 700 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 USTQ9Y2C2 406 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 ASB3Q9Y575 518 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 USP3Q9Y6I4 520 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 KIAA1671Q9BY89 1806 aa6.73□□□□□ -1.33
SPG11-221ENST00000560299 EPOPA6NHQ4 379 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 DPYSL4O14531 572 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 TNFRSF10BO14763 440 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 GRM6O15303 877 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 TEX28O15482 410 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 PRPSAP2O60256 369 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 DAB1O75553 588 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 GRAP2O75791 330 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 GLUD1P00367 558 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 SRGAP2BP0DMP2 458 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 NCAM1P13591 858 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 CTNNA2P26232 953 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 CTNNA1P35221 906 aaKnown RBP6.72□□□□□ -1.33
SPG11-221ENST00000560299 PPP3CCP48454 512 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 CDR1P51861 262 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 CACNA2D1P54289 1103 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 IFRD2Q12894 506 aaPredicted RBP6.72□□□□□ -1.33
SPG11-221ENST00000560299 ADAM15Q13444 863 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 DUSP6Q16828 381 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 DDR2Q16832 855 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 WHAMMP3Q1A5X7 153 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 SLC25A52Q3SY17 297 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 LEXMQ3ZCV2 418 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 PABPC1LQ4VXU2 614 aaKnown RBP6.72□□□□□ -1.33
SPG11-221ENST00000560299 BOLA3Q53S33 107 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 DCAF6Q58WW2 860 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 SEL1L2Q5TEA6 688 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 BSPRYQ5W0U4 402 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 LLGL2Q6P1M3 1020 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 RSPO2Q6UXX9 243 aaPredicted RBP6.72□□□□□ -1.33
SPG11-221ENST00000560299 RSRC2Q7L4I2 434 aaKnown RBP6.72□□□□□ -1.33
SPG11-221ENST00000560299 STRADAQ7RTN6 431 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 POLNQ7Z5Q5 900 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 ITIH5Q86UX2 942 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 MAP7D3Q8IWC1 876 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 TCEAL8Q8IYN2 117 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 RCOR2Q8IZ40 523 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 DEFB106AQ8N104 65 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 CEP112Q8N8E3 955 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 STKLD1Q8NE28 680 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 PDZD8Q8NEN9 1154 aa6.72□□□□□ -1.33
SPG11-221ENST00000560299 CMASQ8NFW8 434 aaPredicted RBP6.72□□□□□ -1.33
SPG11-221ENST00000560299 MAFAQ8NHW3 353 aaPredicted RBP6.72□□□□□ -1.33
SPG11-221ENST00000560299 JOSD2Q8TAC2 188 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms