RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 CTAGE4Q8IX94 777 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 LRRN4CLQ8ND94 238 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 SPPL3Q8TCT6 385 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 NT5C3BQ969T7 300 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 CEP295NLQ96MC4 621 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 TBCBQ99426 244 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 NPY6RQ99463 290 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 GDF15Q99988 308 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 TCF25Q9BQ70 676 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 TRIM62Q9BVG3 475 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 RAB6CQ9H0N0 254 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 CYP4F11Q9HBI6 524 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 COMMD8Q9NX08 183 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 DDX56Q9NY93 547 aaKnown RBP11.72□□□□□ -0.53
USP3-218ENST00000560202 PCSK1NQ9UHG2 260 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 MTUS1Q9ULD2 1270 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 TTC7AQ9ULT0 858 aaPredicted RBP11.72□□□□□ -0.53
USP3-218ENST00000560202 STAP1Q9ULZ2 295 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 USP18Q9UMW8 372 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 SCML2Q9UQR0 700 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 PCDHA11Q9Y5I1 949 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 PTPRDP23468 1912 aa11.72□□□□□ -0.53
USP3-218ENST00000560202 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.71□□□□□ -0.53
USP3-218ENST00000560202 FAM92AA1XBS5 289 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 PGRMC1O00264 195 aaKnown RBP11.71□□□□□ -0.53
USP3-218ENST00000560202 PRPSAP2O60256 369 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 ZRANB2O95218 330 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP3-218ENST00000560202 NCAM1P13591 858 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 YWHAQP27348 245 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 ELF1P32519 619 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 HDAC4P56524 1084 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 YWHAGP61981 247 aaKnown RBP eCLIP11.71□□□□□ -0.53
USP3-218ENST00000560202 ZFYVE27Q5T4F4 411 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 SEL1L2Q5TEA6 688 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 SCYL2Q6P3W7 929 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 BEND5Q7L4P6 421 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 ZNF572Q7Z3I7 529 aaPredicted RBP11.71□□□□□ -0.53
USP3-218ENST00000560202 SCD5Q86SK9 330 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 EXD1Q8NHP7 514 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 GIPC2Q8TF65 315 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 POF1BQ8WVV4 589 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 EDEM1Q92611 657 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 SAMD11Q96NU1 681 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 ADAM33Q9BZ11 813 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 ZWILCHQ9H900 591 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 ENTPD7Q9NQZ7 604 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 ABCC13Q9NSE7 274 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 MAFFQ9ULX9 164 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 IRAK3Q9Y616 596 aa11.71□□□□□ -0.53
USP3-218ENST00000560202 SLC38A8A6NNN8 435 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 M0QYT0 321 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 ENDOD1O94919 500 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 FGGP02679 453 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 KRT1P04264 644 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 DNAJB1P25685 340 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 ALDH1A3P47895 512 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 PITX1P78337 314 aaPredicted RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 MTMR3Q13615 1198 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 SMC1AQ14683 1233 aaKnown RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 CLUL1Q15846 466 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 LONRF2Q1L5Z9 754 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 SMTNL2Q2TAL5 461 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 KCNT1Q5JUK3 1230 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 TEX35Q5T0J7 233 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 OTUD1Q5VV17 481 aaPredicted RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 BTBD8Q5XKL5 378 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 BNIPLQ7Z465 357 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 MON1AQ86VX9 555 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 TCEAL8Q8IYN2 117 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 RCOR2Q8IZ40 523 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 ARHGAP18Q8N392 663 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 MRPL43Q8N983 215 aaKnown RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 SPATA4Q8NEY3 305 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 ACSF2Q96CM8 615 aaPredicted RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 RPGRIP1Q96KN7 1286 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 KLHL5Q96PQ7 755 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 TGS1Q96RS0 853 aaKnown RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 PEBP4Q96S96 227 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 EMILIN2Q9BXX0 1053 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 NMUR1Q9HB89 426 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 TLR9Q9NR96 1032 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 KLHL11Q9NVR0 708 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 RRN3Q9NYV6 651 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 YBX2Q9Y2T7 364 aaKnown RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 YIPF1Q9Y548 306 aa11.71□□□□□ -0.54
USP3-218ENST00000560202 LAMA2P24043 3122 aaKnown RBP11.71□□□□□ -0.54
USP3-218ENST00000560202 HSFX4A0A1B0GTS1 333 aaPredicted RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 HSFX3A0A1B0GWH4 333 aaPredicted RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 A0A1W2PQH9 124 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 H0YGN5 161 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 PRRG1O14668 218 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 TGM5O43548 720 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 ADH1AP07327 375 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 RARAP10276 462 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 RDXP35241 583 aaKnown RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 PBX2P40425 430 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 PGFP49763 221 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 ATXN1P54253 815 aaKnown RBP11.7□□□□□ -0.54
USP3-218ENST00000560202 ERVK-21P61565 698 aa11.7□□□□□ -0.54
USP3-218ENST00000560202 TAF10Q12962 218 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms