RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 A0A1W2PQH9 124 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 A0A1W2PRU2 124 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 SIGLEC16A6NMB1 481 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 PIK3R2O00459 728 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 PAPSS1O43252 624 aaPredicted RBP9.67□□□□□ -0.86
LDLR-210ENST00000559340 NDUFA10O95299 355 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 LCA5LO95447 670 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 ERBB2P04626 1255 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 KRT3P12035 628 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 BMP1P13497 986 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 RARGP13631 454 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 HDCP19113 662 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 WEE1P30291 646 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 GBP1P32455 592 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 ATP5C1P36542 298 aaKnown RBP9.67□□□□□ -0.86
LDLR-210ENST00000559340 GFPT1Q06210 699 aaPredicted RBP9.67□□□□□ -0.86
LDLR-210ENST00000559340 CLUL1Q15846 466 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 PRSS36Q5K4E3 855 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 GPR158Q5T848 1215 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 FAM102AQ5T9C2 384 aaPredicted RBP9.67□□□□□ -0.86
LDLR-210ENST00000559340 DNAJC24Q6P3W2 148 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 DCUN1D2Q6PH85 259 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 KLHDC10Q6PID8 442 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 FAM183BPQ6ZVS7 135 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 GAREM2Q75VX8 874 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 MON1BQ7L1V2 547 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 SLC26A9Q7LBE3 791 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 DDX42Q86XP3 938 aaKnown RBP eCLIP9.67□□□□□ -0.86
LDLR-210ENST00000559340 XYLT1Q86Y38 959 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 C3orf20Q8ND61 904 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 SUSD6Q92537 303 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 ZNF653Q96CK0 615 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 PPP1R9BQ96SB3 815 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 POPDC2Q9HBU9 364 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 ZNF334Q9HCZ1 680 aaPredicted RBP9.67□□□□□ -0.86
LDLR-210ENST00000559340 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.67□□□□□ -0.86
LDLR-210ENST00000559340 CNOT8Q9UFF9 292 aaKnown RBP9.67□□□□□ -0.86
LDLR-210ENST00000559340 DNMT3LQ9UJW3 386 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 CDH7Q9ULB5 785 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 STAP1Q9ULZ2 295 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 USTQ9Y2C2 406 aa9.67□□□□□ -0.86
LDLR-210ENST00000559340 TCF20Q9UGU0 1960 aaKnown RBP9.66□□□□□ -0.86
LDLR-210ENST00000559340 GOLGA8SH3BPF8 625 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 DPYSL4O14531 572 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 TLR5O60602 858 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 F9P00740 461 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 TMEM253P0C7T8 217 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 GBP2P32456 591 aaPredicted RBP9.66□□□□□ -0.86
LDLR-210ENST00000559340 NOS2P35228 1153 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 AVPR1AP37288 418 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 GALCP54803 685 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 NTHL1P78549 312 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 COG7P83436 770 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 PTP4A2Q12974 167 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 MTA1Q13330 715 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 TEAD2Q15562 447 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 C10orf120Q5SQS8 335 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 PTCRAQ6ISU1 281 aaPredicted RBP9.66□□□□□ -0.86
LDLR-210ENST00000559340 OLFML1Q6UWY5 402 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 MTSS1LQ765P7 747 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 SND1Q7KZF4 910 aaKnown RBP eCLIP9.66□□□□□ -0.863e-7■■■■□ 20.2
LDLR-210ENST00000559340 GET4Q7L5D6 327 aaPredicted RBP9.66□□□□□ -0.86
LDLR-210ENST00000559340 KIAA1328Q86T90 577 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 MAB21L3Q8N8X9 362 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 SHKBP1Q8TBC3 707 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 PHF7Q9BWX1 381 aaPredicted RBP9.66□□□□□ -0.86
LDLR-210ENST00000559340 KIF9Q9HAQ2 790 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 TRPC7Q9HCX4 862 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 SPTLC3Q9NUV7 552 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.66□□□□□ -0.86
LDLR-210ENST00000559340 TAS2R14Q9NYV8 317 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 UVRAGQ9P2Y5 699 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 PAXBP1Q9Y5B6 917 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 PCDHA13Q9Y5I0 950 aa9.66□□□□□ -0.86
LDLR-210ENST00000559340 EYSQ5T1H1 3165 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 GRXCR2A6NFK2 248 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SOWAHDA6NJG2 315 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 YJEFN3A6XGL0 299 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 E7ENQ6 273 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 DAB1O75553 588 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 GABBR2O75899 941 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 CKMP06732 381 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SLC2A3P11169 496 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 MBL2P11226 248 aaPredicted RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 NCAM1P13591 858 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 ABCB4P21439 1286 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SDC4P31431 198 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 PLA2G5P39877 138 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 MATKP42679 507 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 RNASE9P60153 205 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 SLC7A9P82251 487 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 CYP4F8P98187 520 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SMAD2Q15796 467 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 IFI16Q16666 785 aaKnown RBP9.65□□□□□ -0.86
LDLR-210ENST00000559340 DCAF6Q58WW2 860 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 TXNDC8Q6A555 127 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 PLEKHA7Q6IQ23 1121 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 MSANTD2Q6P1R3 559 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 SCD5Q86SK9 330 aa9.65□□□□□ -0.86
LDLR-210ENST00000559340 TMEM150AQ86TG1 271 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms