RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CLPTM1O96005 669 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 MAPTP10636 758 aaKnown RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 MMP8P22894 467 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 NCKAP1LP55160 1127 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 ACTR3P61158 418 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 ITGA9Q13797 1035 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 R3HDM1Q15032 1099 aaKnown RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 ZNF699Q32M78 642 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 N4BP2L1Q5TBK1 243 aaPredicted RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 CES4AQ5XG92 561 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 NAT8LQ8N9F0 302 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 SYTL5Q8TDW5 730 aaPredicted RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 LRGUKQ96M69 825 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 MFSD14AQ96MC6 490 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 AGAP3Q96P47 875 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 ADPGKQ9BRR6 497 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 KRT38O76015 456 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 ITGAVP06756 1048 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 GRIA2P42262 883 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 PHKA2P46019 1235 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 DLGAP5Q15398 846 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 PTPN20Q4JDL3 420 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 NET1Q7Z628 596 aaPredicted RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 TRIM74Q86UV6 250 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 TRIM73Q86UV7 250 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 MAP7D3Q8IWC1 876 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 KIAA0319LQ8IZA0 1049 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 TMA16Q96EY4 203 aaKnown RBP11.75□□□□□ -0.53
LDLR-208ENST00000558518 OLFM3Q96PB7 478 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 S100A14Q9HCY8 104 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 GINS2Q9Y248 185 aa11.75□□□□□ -0.53
LDLR-208ENST00000558518 C15orf38-AP3S2A0A0A6YYH1 394 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 INHBCP55103 352 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 BCAR1P56945 870 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 PIGHQ14442 188 aaPredicted RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 ZC3H12AQ5D1E8 599 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 TMCO4Q5TGY1 634 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.74□□□□□ -0.532e-6■■□□□ 12
LDLR-208ENST00000558518 ARPINQ7Z6K5 226 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 CCDC60Q8IWA6 550 aaPredicted RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 DRAXINQ8NBI3 349 aaPredicted RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 SLC44A1Q8WWI5 657 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 HEXIM2Q96MH2 286 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 DHX35Q9H5Z1 703 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 TLE6Q9H808 572 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 TBC1D22BQ9NU19 505 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 COQ4Q9Y3A0 265 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 GOLGA8TH3BQL2 631 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 ABLIM1O14639 778 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 SEC24DO94855 1032 aaPredicted RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 CSPG5O95196 566 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 STAMBPO95630 424 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 PRAMEP78395 509 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 C1QBPQ07021 282 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 C6orf52Q5T4I8 152 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 PHTF2Q8N3S3 785 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 LRRC71Q8N4P6 559 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 STKLD1Q8NE28 680 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 MRPL1Q9BYD6 325 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 MAGEB5Q9BZ81 275 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 FAM49BQ9NUQ9 324 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 FAF1Q9UNN5 650 aaPredicted RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 HBS1LQ9Y450 684 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 TTLL3Q9Y4R7 772 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 PRPSAP2O60256 369 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 FOXD2O60548 495 aaPredicted RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 PDGFRAP16234 1089 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 ACO1P21399 889 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 MAPK10P53779 464 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 KCTD21Q4G0X4 260 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 TRIM72Q6ZMU5 477 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 C15orf52Q6ZUT6 534 aaKnown RBP11.74□□□□□ -0.53
LDLR-208ENST00000558518 ZNF677Q86XU0 584 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 ZNF276Q8N554 614 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 SNX31Q8N9S9 440 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 ZNF398Q8TD17 642 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 KCNK4Q9NYG8 393 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 USP18Q9UMW8 372 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 TMX2Q9Y320 296 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 PLLPQ9Y342 182 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 MAST2Q6P0Q8 1798 aa11.74□□□□□ -0.53
LDLR-208ENST00000558518 HSPA4LO95757 839 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 AMHP03971 560 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 C4BPAP04003 597 aaKnown RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 HMGCRP04035 888 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 KRT7P08729 469 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 CD1EP15812 388 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 SLC1A6P48664 564 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 SPDYAQ5MJ70 313 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 PRAMEF18Q5VWM3 479 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 PDPK2PQ6A1A2 396 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 CMC1Q7Z7K0 106 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 ARHGAP18Q8N392 663 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 ATP6V0A1Q93050 837 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 NLRP4Q96MN2 994 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 CPXM1Q96SM3 734 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 OXCT2Q9BYC2 517 aaPredicted RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 DDX56Q9NY93 547 aaKnown RBP11.73□□□□□ -0.53
LDLR-208ENST00000558518 INO80B-WBP1J3KQ70 363 aa11.73□□□□□ -0.53
LDLR-208ENST00000558518 USP12O75317 370 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms