RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 XPNPEP3Q9NQH7 507 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 ZBTB40Q9NUA8 1239 aa3.28□□□□□ -1.88
VPS13C-205ENST00000558088 C4orf47A7E2U8 309 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 A8MVJ9 347 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 PHGDHO43175 533 aaKnown RBP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 RASSF9O75901 435 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 PF4V1P10720 104 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 NPR1P16066 1061 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 GATMP50440 423 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 PGDP52209 483 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 PGGT1BP53609 377 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 SLC12A2P55011 1212 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 ZXDBP98169 803 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 TIAL1Q01085 375 aaKnown RBP eCLIP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 KPNB1Q14974 876 aaKnown RBP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 ASIC2Q16515 512 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 FAM57BQ71RH2 274 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 DCP1BQ8IZD4 617 aaKnown RBP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 FAM71DQ8N9W8 422 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 JPH3Q8WXH2 748 aaPredicted RBP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 EDC3Q96F86 508 aaKnown RBP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 SUCLG2Q96I99 432 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 ZNF668Q96K58 619 aaPredicted RBP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 CINPQ9BW66 212 aaPredicted RBP3.27□□□□□ -1.89
VPS13C-205ENST00000558088 SCNM1Q9BWG6 230 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 DPH1Q9BZG8 443 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 NUAK2Q9H093 628 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 TCF7L1Q9HCS4 588 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 AASDHPPTQ9NRN7 309 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 SELENONQ9NZV5 590 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 STEAP1Q9UHE8 339 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 IP6K2Q9UHH9 426 aa3.27□□□□□ -1.89
VPS13C-205ENST00000558088 C2CD4BA6NLJ0 364 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 TMEM233B4DJY2 109 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 F8W810 466 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 H3BML4 177 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 FYB1O15117 783 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 CTIFO43310 598 aaKnown RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 AKAP10O43572 662 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 SNX2O60749 519 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 PIAS2O75928 621 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 PLAUP00749 431 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 KITP10721 976 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 HSPA6P17066 643 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 ATF7P17544 494 aaPredicted RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 NCLP19338 710 aaKnown RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 TBXAS1P24557 533 aaPredicted RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 ADRA1DP25100 572 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 PTDSS1P48651 473 aaKnown RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 RFX8Q6ZV50 586 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 BCAS4Q8TDM0 211 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 DIS3LQ8TF46 1054 aaKnown RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 TRMT61AQ96FX7 289 aaKnown RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 WDYHV1Q96HA8 205 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 ZBTB45Q96K62 511 aaPredicted RBP3.26□□□□□ -1.89
VPS13C-205ENST00000558088 TMEM8AQ9HCN3 771 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 NMRK2Q9NPI5 230 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 HOMER2Q9NSB8 354 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 HDAC9Q9UKV0 1011 aa3.26□□□□□ -1.89
VPS13C-205ENST00000558088 TTBK1Q5TCY1 1321 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 MBD3L4A6NDZ8 208 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 MBD3L3A6NE82 208 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 RRP9O43818 475 aaKnown RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 SLC28A2O43868 658 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 UBXN7O94888 489 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 NGFRP08138 427 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 HGFP14210 728 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 EN2P19622 333 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 KLRC1P26715 233 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 SLC7A1P30825 629 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 JAK3P52333 1124 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 ITGA8P53708 1063 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 CCDC15Q0P6D6 951 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 STK3Q13188 491 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 ZNF267Q14586 743 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 ZNF628Q5EBL2 1059 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 EARS2Q5JPH6 523 aaKnown RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 USP43Q70EL4 1123 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 TRAPPC11Q7Z392 1133 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 CHPFQ8IZ52 775 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 TMEM199Q8N511 208 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 SLC44A5Q8NCS7 719 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 PIGKQ92643 395 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 ATP2A3Q93084 1043 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 DNMT3BQ9UBC3 853 aaKnown RBP3.25□□□□□ -1.89
VPS13C-205ENST00000558088 FZD4Q9ULV1 537 aa3.25□□□□□ -1.89
VPS13C-205ENST00000558088 TTC3P53804 2025 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 AQP7P3A6NL99 342 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 H7C4K7 107 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 NDUFB8O95169 186 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 PARP1P09874 1014 aaKnown RBP3.24□□□□□ -1.89
VPS13C-205ENST00000558088 MCM5P33992 734 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 NEK2P51955 445 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 EIF4A1P60842 406 aaKnown RBP3.24□□□□□ -1.89
VPS13C-205ENST00000558088 GPC5P78333 572 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 PPATQ06203 517 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 ARHGEF7Q14155 803 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 CAPRIN2Q6IMN6 1127 aaKnown RBP3.24□□□□□ -1.89
VPS13C-205ENST00000558088 KCTD20Q7Z5Y7 419 aa3.24□□□□□ -1.89
VPS13C-205ENST00000558088 P3H2Q8IVL5 708 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms