RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 HADHQ16836 314 aaKnown RBP17.63■□□□□ 0.41
SNX1-203ENST00000558040 SLC25A52Q3SY17 297 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 CC2D1AQ6P1N0 951 aaPredicted RBP17.63■□□□□ 0.41
SNX1-203ENST00000558040 PSMG2Q969U7 264 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 MRPL38Q96DV4 380 aaKnown RBP17.63■□□□□ 0.41
SNX1-203ENST00000558040 MYRFLQ96LU7 910 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 CDCA3Q99618 268 aaPredicted RBP17.63■□□□□ 0.41
SNX1-203ENST00000558040 TLR10Q9BXR5 811 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 TLE6Q9H808 572 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 TMEM51Q9NW97 253 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 CLIC5Q9NZA1 410 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 GMIPQ9P107 970 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 HYOU1Q9Y4L1 999 aa17.63■□□□□ 0.41
SNX1-203ENST00000558040 A0A1W2PQH9 124 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 EPOPA6NHQ4 379 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 PSTPIP1O43586 416 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 RALAP11233 206 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 CTNNA2P26232 953 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 CTNNA1P35221 906 aaKnown RBP17.62■□□□□ 0.41
SNX1-203ENST00000558040 PCK1P35558 622 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 PPP3CCP48454 512 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 ATP11AP98196 1134 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 CDO1Q16878 200 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 C15orf59Q2T9L4 293 aaPredicted RBP17.62■□□□□ 0.41
SNX1-203ENST00000558040 LRRC38Q5VT99 294 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 PAPD7Q5XG87 772 aaKnown RBP17.62■□□□□ 0.41
SNX1-203ENST00000558040 STRADAQ7RTN6 431 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 SCD5Q86SK9 330 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 RHOT1Q8IXI2 618 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 RNF139Q8WU17 664 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 FAM172AQ8WUF8 416 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 SLC22A17Q8WUG5 538 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 HES6Q96HZ4 224 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 ZNF512Q96ME7 567 aaPredicted RBP17.62■□□□□ 0.41
SNX1-203ENST00000558040 CDK5RAP1Q96SZ6 601 aaKnown RBP17.62■□□□□ 0.41
SNX1-203ENST00000558040 NPY6RQ99463 290 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 MAN1C1Q9NR34 630 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 OLA1Q9NTK5 396 aaKnown RBP17.62■□□□□ 0.41
SNX1-203ENST00000558040 PACSIN2Q9UNF0 486 aaPredicted RBP17.62■□□□□ 0.41
SNX1-203ENST00000558040 NAALADL1Q9UQQ1 740 aa17.62■□□□□ 0.41
SNX1-203ENST00000558040 COL4A4P53420 1690 aaPredicted RBP17.61■□□□□ 0.41
SNX1-203ENST00000558040 TMEM265A0A087WTH1 108 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 FANCGO15287 622 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 NCK2O43639 380 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 LRCH4O75427 683 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 ZMYND10O75800 440 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 FYNP06241 537 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 PRLRP16471 622 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 HMGA1P17096 107 aaKnown RBP17.61■□□□□ 0.41
SNX1-203ENST00000558040 TCP1P17987 556 aaKnown RBP17.61■□□□□ 0.41
SNX1-203ENST00000558040 HOXA9P31269 272 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 TUBB2AQ13885 445 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 DUSP6Q16828 381 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 SYPL2Q5VXT5 272 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 RSRC2Q7L4I2 434 aaKnown RBP17.61■□□□□ 0.41
SNX1-203ENST00000558040 DNAJB7Q7Z6W7 309 aaPredicted RBP17.61■□□□□ 0.41
SNX1-203ENST00000558040 TADA2BQ86TJ2 420 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 EDEM1Q92611 657 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 CENPIQ92674 756 aaPredicted RBP17.61■□□□□ 0.41
SNX1-203ENST00000558040 CD101Q93033 1021 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 NT5C3BQ969T7 300 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 TBCBQ99426 244 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 TUBB2BQ9BVA1 445 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 ZNF576Q9H609 170 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 SNX12Q9UMY4 172 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 SAR1BQ9Y6B6 198 aa17.61■□□□□ 0.41
SNX1-203ENST00000558040 GREB1Q4ZG55 1949 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 SPDYE4A6NLX3 237 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 M0QYT0 321 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 PER2O15055 1255 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 PRPSAP2O60256 369 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 URI1O94763 535 aaPredicted RBP17.6■□□□□ 0.41
SNX1-203ENST00000558040 F9P00740 461 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 KRT7P08729 469 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 HNRNPA1P09651 372 aaKnown RBP eCLIP17.6■□□□□ 0.41
SNX1-203ENST00000558040 ZDHHC11BP0C7U3 371 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 GBP1P32455 592 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 RDXP35241 583 aaKnown RBP17.6■□□□□ 0.41
SNX1-203ENST00000558040 DNA2P51530 1060 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 PABPC1LQ4VXU2 614 aaKnown RBP17.6■□□□□ 0.41
SNX1-203ENST00000558040 SND1Q7KZF4 910 aaKnown RBP eCLIP17.6■□□□□ 0.419e-6■■□□□ 12.1
SNX1-203ENST00000558040 POLNQ7Z5Q5 900 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 ADGRD2Q7Z7M1 963 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 RBM23Q86U06 439 aaKnown RBP17.6■□□□□ 0.41
SNX1-203ENST00000558040 PGAP3Q96FM1 320 aaPredicted RBP17.6■□□□□ 0.41
SNX1-203ENST00000558040 FAM204AQ9H8W3 233 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 NMUR1Q9HB89 426 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 RRAGDQ9NQL2 400 aaPredicted RBP17.6■□□□□ 0.41
SNX1-203ENST00000558040 ZDHHC7Q9NXF8 308 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 TRPM5Q9NZQ8 1165 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 PCDHA3Q9Y5H8 950 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 HCFC2Q9Y5Z7 792 aa17.6■□□□□ 0.41
SNX1-203ENST00000558040 KCNK3O14649 394 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 DDX3YO15523 660 aaKnown RBP17.59■□□□□ 0.41
SNX1-203ENST00000558040 XYLBO75191 536 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 ENDOD1O94919 500 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 RARGP13631 454 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 EPCAMP16422 314 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 MIPP30301 263 aa17.59■□□□□ 0.41
SNX1-203ENST00000558040 NRIP1P48552 1158 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms