RNA–Protein interactions for RNA: ENST00000557517.1

PSMC6-215, Transcript of proteasome 26S subunit, ATPase 6, human

TSL 3

Gene PSMC6, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PSMC6-215	ENST00000557517	SMC2	O95347	1197 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	CYP17A1	P05093	508 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	FAM200B	P0CF97	657 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	TRIM21	P19474	475 aa	Known RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	PMS1	P54277	932 aa	Known RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	IFRD2	Q12894	506 aa	Predicted RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	LPAL2	Q16609	132 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	HEATR6	Q6AI08	1181 aa	Known RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	KLHDC10	Q6PID8	442 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	HTR3D	Q70Z44	454 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	CCDC150	Q8NCX0	1101 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	USP33	Q8TEY7	942 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	GAB3	Q8WWW8	586 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	LOXL4	Q96JB6	756 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	ZC3H10	Q96K80	434 aa	Known RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	KLF16	Q9BXK1	252 aa	Predicted RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	DUSP16	Q9BY84	665 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	CCSER2	Q9H7U1	834 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	PARD6A	Q9NPB6	346 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	TLR8	Q9NR97	1041 aa	Known RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	FAM49B	Q9NUQ9	324 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	POLR3B	Q9NW08	1133 aa	Predicted RBP	11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	OSER1	Q9NX31	292 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	GMIP	Q9P107	970 aa		11.18	□□□□□ -0.62
PSMC6-215	ENST00000557517	IGF2R	P11717	2491 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	SLC16A3	O15427	465 aa	Known RBP	11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	TLR5	O60602	858 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	TBX18	O95935	607 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	EPB41	P11171	864 aa	Known RBP	11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	ATP5C1	P36542	298 aa	Known RBP	11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	SLC6A11	P48066	632 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	PXN	P49023	591 aa	Predicted RBP	11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	KIF11	P52732	1056 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	MRPS21	P82921	87 aa	Known RBP	11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	LRRC63	Q05C16	580 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	CSRP2	Q16527	193 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	FOXR2	Q6PJQ5	311 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	PRR23B	Q6ZRT6	265 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	GPRIN1	Q7Z2K8	1008 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	LAPTM4B	Q86VI4	370 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	FAM160A2	Q8N612	972 aa	Predicted RBP	11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	RPLP0P6	Q8NHW5	317 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	TATDN2	Q93075	761 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	SMARCE1	Q969G3	411 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	TMEM176A	Q96HP8	235 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	PNKP	Q96T60	521 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	DNAI2	Q9GZS0	605 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	11.17	□□□□□ -0.62	1e-8	■■■■■ 43.5
PSMC6-215	ENST00000557517	CISH	Q9NSE2	258 aa		11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	HOOK1	Q9UJC3	728 aa	Known RBP	11.17	□□□□□ -0.62
PSMC6-215	ENST00000557517	RALGAPA1	Q6GYQ0	2036 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ANTXRL	A6NF34	631 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	SLC30A4	O14863	429 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	PMM2	O15305	246 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	HOXC11	O43248	304 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	FOXD2	O60548	495 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	RPP40	O75818	363 aa	Known RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	APBB3	O95704	486 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ADH1C	P00326	375 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	CD58	P19256	250 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ACO1	P21399	889 aa	Known RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ADORA2B	P29275	332 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	GRIA2	P42262	883 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	TNFRSF4	P43489	277 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	KIR2DL1	P43626	348 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	MXI1	P50539	228 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	RAD23B	P54727	409 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	GAD2	Q05329	585 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	SPEM2	Q0P670	501 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	MESP2	Q0VG99	397 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	DMC1	Q14565	340 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	HSF5	Q4G112	596 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	CBWD6	Q4V339	395 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	CBWD3	Q5JTY5	395 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	CBWD5	Q5RIA9	395 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	LY6G5C	Q5SRR4	150 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	PPP1R26	Q5T8A7	1209 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ARHGAP17	Q68EM7	881 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	CCDC186	Q7Z3E2	898 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	CACNA2D4	Q7Z3S7	1137 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	SCD5	Q86SK9	330 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	RASSF3	Q86WH2	238 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	TMEM25	Q86YD3	366 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	BBS7	Q8IWZ6	715 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ETFBKMT	Q8IXQ9	262 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	PHTF2	Q8N3S3	785 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	SLC4A11	Q8NBS3	891 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	KCNV2	Q8TDN2	545 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ERCC4	Q92889	916 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	WBP2	Q969T9	261 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	SLC35C1	Q96A29	364 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	ACD	Q96AP0	544 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	DHTKD1	Q96HY7	919 aa	Predicted RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	HEXIM2	Q96MH2	286 aa	Known RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	MMRN2	Q9H8L6	949 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	NMUR1	Q9HB89	426 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	METTL14	Q9HCE5	456 aa	Known RBP	11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	SPHK2	Q9NRA0	654 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	SEMA4G	Q9NTN9	838 aa		11.16	□□□□□ -0.62
PSMC6-215	ENST00000557517	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	11.16	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms