RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 DNAJC17Q9NVM6 304 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 TOR4AQ9NXH8 423 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 SEL1LQ9UBV2 794 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 SUSD2Q9UGT4 822 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 APOBEC2Q9Y235 224 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 STARD13Q9Y3M8 1113 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 PCDHB9Q9Y5E1 797 aa8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 TDRD6O60522 2096 aaKnown RBP8.68□□□□□ -1.02
CCDC88C-214ENST00000557507 MYO18BQ8IUG5 2567 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 NEDD8-MDP1E9PL57 170 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 CACNG3O60359 315 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 GREM1O60565 184 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 PRPF6O94906 941 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 TNNC2P02585 160 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 GAP43P17677 238 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 YWHAQP27348 245 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 GJB2P29033 226 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 PGFP49763 221 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 BNC1Q01954 994 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 HECTD3Q5T447 861 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 GRAMD4Q6IC98 578 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 KIAA1324Q6UXG2 1013 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 SYCP3Q8IZU3 236 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 NUP93Q8N1F7 819 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 ZCCHC9Q8N567 271 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 GLIS3Q8NEA6 775 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 OR6B3Q8NGW1 331 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 ADAM32Q8TC27 787 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 P2RY11Q96G91 374 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 DUSP9Q99956 384 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 B3GNT5Q9BYG0 378 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 FAM124BQ9H5Z6 455 aaPredicted RBP8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 OLFML3Q9NRN5 406 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 CACNA2D2Q9NY47 1150 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 GMIPQ9P107 970 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 STK17AQ9UEE5 414 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 FNDC3AQ9Y2H6 1198 aaKnown RBP8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 SH3BP1Q9Y3L3 701 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 KIF3AQ9Y496 699 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 TENM4Q6N022 2769 aa8.67□□□□□ -1.02
CCDC88C-214ENST00000557507 A0A1B0GTW7 788 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 FRMD3A2A2Y4 597 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 MEI4A8MW99 385 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 WASH3PC4AMC7 463 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 H3BQV1 296 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 NDUFS2O75306 463 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 TACC1O75410 805 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 DKK1O94907 266 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 RTN3O95197 1032 aaPredicted RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 PRB1P04280 392 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 ATXN1LP0C7T5 689 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 IDEP14735 1019 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 GNSP15586 552 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 PTPN1P18031 435 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 GNL1P36915 607 aaPredicted RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 TUBP50607 506 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 SLC5A3P53794 718 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 SF3A1Q15459 793 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 SYCP2LQ5T4T6 812 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 SNX30Q5VWJ9 437 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 TMPRSS7Q7RTY8 843 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 TRAPPC11Q7Z392 1133 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 FAM35AQ86V20 835 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 WDR49Q8IV35 697 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 B3GALNT2Q8NCR0 500 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 PDZD8Q8NEN9 1154 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 SETD7Q8WTS6 366 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 DNASE2BQ8WZ79 361 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 OVCA2Q8WZ82 227 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 KCNK16Q96T55 309 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 BBS2Q9BXC9 721 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 SNX25Q9H3E2 840 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 USP36Q9P275 1121 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 DKK4Q9UBT3 224 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 CHORDC1Q9UHD1 332 aaPredicted RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 R3HCC1Q9Y3T6 440 aaKnown RBP8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 SLCO1B1Q9Y6L6 691 aa8.66□□□□□ -1.02
CCDC88C-214ENST00000557507 FAM92AA1XBS5 289 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 KCNJ18B7U540 433 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 CILPO75339 1184 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 CD2BP2O95400 341 aaKnown RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 BMP15O95972 392 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 CST3P01034 146 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 ZDHHC11BP0C7U3 371 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 NCAM1P13591 858 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 TYRP14679 529 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 CD6P30203 668 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 HOXD13P35453 343 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 CYP4F3Q08477 520 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 ALCAMQ13740 583 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 NFKBIBQ15653 356 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 DUOXA2Q1HG44 320 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 SKOR2Q2VWA4 1001 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 FUT11Q495W5 492 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 PREPLQ4J6C6 727 aaPredicted RBP8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 WDR45BQ5MNZ6 344 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 SDE2Q6IQ49 451 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 TPGS1Q6ZTW0 290 aa8.65□□□□□ -1.02
CCDC88C-214ENST00000557507 PAQR9Q6ZVX9 377 aa8.65□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms