RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ATXN3P54252 364 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-230ENST00000557427 SEC13P55735 322 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 POU5F1Q01860 360 aaKnown RBP13.29□□□□□ -0.28
SHMT2-230ENST00000557427 HNRNPDQ14103 355 aaKnown RBP13.29□□□□□ -0.28
SHMT2-230ENST00000557427 MAP7D1Q3KQU3 841 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 LYSMD4Q5XG99 296 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 LMBRD2Q68DH5 695 aaPredicted RBP13.29□□□□□ -0.28
SHMT2-230ENST00000557427 SCARA3Q6AZY7 606 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 OVOS1Q6IE37 1185 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 ITIH5Q86UX2 942 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 TTC30AQ86WT1 665 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 BRSK2Q8IWQ3 736 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 GPD1LQ8N335 351 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 PPP1R13BQ96KQ4 1090 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 TSG101Q99816 390 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 TDP1Q9NUW8 608 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 DNAAF2Q9NVR5 837 aaKnown RBP13.29□□□□□ -0.28
SHMT2-230ENST00000557427 MMP17Q9ULZ9 603 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 AGAP1Q9UPQ3 857 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 DENND4CQ5VZ89 1909 aa13.29□□□□□ -0.28
SHMT2-230ENST00000557427 GOLGA6L9A6NEM1 432 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 ZNF233A6NK53 670 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 OR6C75A6NL08 312 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 ATXN7O15265 892 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-230ENST00000557427 MAP3K13O43283 966 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 F11P03951 625 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 GYPCP04921 128 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 SERPINF2P08697 491 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 KRT19P08727 400 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 ODC1P11926 461 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 TAF6P49848 677 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 CYP2J2P51589 502 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 ADKP55263 362 aaKnown RBP13.28□□□□□ -0.28
SHMT2-230ENST00000557427 UBXN1Q04323 297 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 GFPT1Q06210 699 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-230ENST00000557427 CYP4F3Q08477 520 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 GOLGA8FQ08AF8 430 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 GOLGA8DPQ0D2H9 430 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 PDGFRLQ15198 375 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 DUOXA1Q1HG43 343 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 CEP135Q66GS9 1140 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 TXNDC8Q6A555 127 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 TOGARAM2Q6ZUX3 1019 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 EPM2AIP1Q7L775 607 aaPredicted RBP13.28□□□□□ -0.28
SHMT2-230ENST00000557427 ZNF605Q86T29 641 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 METTL23Q86XA0 190 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 CBWD2Q8IUF1 395 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 SFTPA1Q8IWL2 248 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 ZNF843Q8N446 348 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 DEFB119Q8N690 84 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 GIPC2Q8TF65 315 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 SCFD1Q8WVM8 642 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 TUBGCP2Q9BSJ2 902 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 HSPBP1Q9NZL4 362 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 HECTD1Q9ULT8 2610 aa13.28□□□□□ -0.28
SHMT2-230ENST00000557427 HELZP42694 1942 aaKnown RBP13.27□□□□□ -0.28
SHMT2-230ENST00000557427 UQCRHLA0A096LP55 91 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 ARHGAP33O14559 1287 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 EIF3DO15371 548 aaKnown RBP eCLIP13.27□□□□□ -0.29
SHMT2-230ENST00000557427 TGFB1I1O43294 461 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 CBFA2T3O75081 653 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 ITGB3P05106 788 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 UQCRHP07919 91 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 TYMPP19971 482 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 POLR2BP30876 1174 aaKnown RBP13.27□□□□□ -0.29
SHMT2-230ENST00000557427 AVPR1AP37288 418 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 OPRD1P41143 372 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 BFSP1Q12934 665 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 MYBPC2Q14324 1141 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 ZCWPW2Q504Y3 356 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 SPDYCQ5MJ68 293 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 WSCD1Q658N2 575 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 NT5DC4Q86YG4 428 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 CPA6Q8N4T0 437 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 OR10T2Q8NGX3 314 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 IQCDQ96DY2 449 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 SEPT5Q99719 369 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-230ENST00000557427 NUP58Q9BVL2 599 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 OXCT2Q9BYC2 517 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-230ENST00000557427 POLMQ9NP87 494 aaPredicted RBP13.27□□□□□ -0.29
SHMT2-230ENST00000557427 TRMT1Q9NXH9 659 aaKnown RBP13.27□□□□□ -0.29
SHMT2-230ENST00000557427 HSFX1Q9UBD0 423 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 WNT6Q9Y6F9 365 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 MYO18BQ8IUG5 2567 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 PLXND1Q9Y4D7 1925 aa13.27□□□□□ -0.29
SHMT2-230ENST00000557427 KPNA7A9QM74 516 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 SGK1O00141 431 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 OBSL1O75147 1896 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 HMGA1P17096 107 aaKnown RBP13.26□□□□□ -0.29
SHMT2-230ENST00000557427 PAX3P23760 479 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 CASP14P31944 242 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 HOXD12P35452 270 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 MTIF2P46199 727 aaKnown RBP13.26□□□□□ -0.29
SHMT2-230ENST00000557427 RBP5P82980 135 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 MESP2Q0VG99 397 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 CAMK2BQ13554 666 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 MTF1Q14872 753 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 ZNF638Q14966 1978 aaKnown RBP13.26□□□□□ -0.29
SHMT2-230ENST00000557427 GAB4Q2WGN9 574 aa13.26□□□□□ -0.29
SHMT2-230ENST00000557427 EML3Q32P44 896 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms