RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 GPD2P43304 727 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 ACADSBP45954 432 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 PGFP49763 221 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 TPM4P67936 248 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 DRAP1Q14919 205 aaPredicted RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 C10orf120Q5SQS8 335 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 BTBD8Q5XKL5 378 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 PMF1Q6P1K2 205 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 RSRC2Q7L4I2 434 aaKnown RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 DHX40Q8IX18 779 aaKnown RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 CCDC105Q8IYK2 499 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 FAM71AQ8IYT1 594 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 TTC8Q8TAM2 541 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 STK32AQ8WU08 396 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 IRGQQ8WZA9 623 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 ZFRQ96KR1 1074 aaKnown RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 KLF16Q9BXK1 252 aaPredicted RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 STK33Q9BYT3 514 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 IRF2BPLQ9H1B7 796 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 HSD3B7Q9H2F3 369 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 ECT2Q9H8V3 914 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 OLA1Q9NTK5 396 aaKnown RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 LSM7Q9UK45 103 aaKnown RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 AJAP1Q9UKB5 411 aaPredicted RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 STRIP2Q9ULQ0 834 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 NDRG2Q9UN36 371 aaKnown RBP13.11□□□□□ -0.31
SLIRP-209ENST00000557342 PCDHGC3Q9UN70 934 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 FHOD1Q9Y613 1164 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 MYOFQ9NZM1 2061 aa13.11□□□□□ -0.31
SLIRP-209ENST00000557342 SHISA7A6NL88 538 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 KRT9P35527 623 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 RPS9P46781 194 aaKnown RBP13.1□□□□□ -0.31
SLIRP-209ENST00000557342 SOX9P48436 509 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 RGS7P49802 495 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 PTPN5P54829 565 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 DAOAP59103 153 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 COG7P83436 770 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 UBXN1Q04323 297 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 LRRC32Q14392 662 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 FILIP1LQ4L180 1135 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 DENND1BQ6P3S1 775 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 DTWD2Q8NBA8 298 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 GOLGA1Q92805 767 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 CLDN23Q96B33 292 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 PCMTD1Q96MG8 357 aaPredicted RBP13.1□□□□□ -0.31
SLIRP-209ENST00000557342 IER2Q9BTL4 223 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 NAA15Q9BXJ9 866 aaKnown RBP13.1□□□□□ -0.31
SLIRP-209ENST00000557342 ST7Q9NRC1 585 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 ABCC13Q9NSE7 274 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 DLGAP2Q9P1A6 1054 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 MTF2Q9Y483 593 aaPredicted RBP13.1□□□□□ -0.31
SLIRP-209ENST00000557342 CEP83Q9Y592 693 aa13.1□□□□□ -0.31
SLIRP-209ENST00000557342 SART1O43290 800 aaKnown RBP13.09□□□□□ -0.31
SLIRP-209ENST00000557342 TBX18O95935 607 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 IRF1P10914 325 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 ATP1A3P13637 1013 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 CLCN1P35523 988 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 RPL34P49207 117 aaKnown RBP13.09□□□□□ -0.31
SLIRP-209ENST00000557342 SNX16P57768 344 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 SYCP1Q15431 976 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 ZSCAN23Q3MJ62 389 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 DGKKQ5KSL6 1271 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 BSPRYQ5W0U4 402 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 HTR3DQ70Z44 454 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 APTXQ7Z2E3 356 aaKnown RBP13.09□□□□□ -0.31
SLIRP-209ENST00000557342 SLC47A2Q86VL8 602 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 ADGRG2Q8IZP9 1017 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 NEK11Q8NG66 645 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 RNF139Q8WU17 664 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 NOX5Q96PH1 765 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 ERGIC2Q96RQ1 377 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 TRIM62Q9BVG3 475 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 GANQ9H2C0 597 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 LHX5Q9H2C1 402 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 LINC00597Q9H2U6 94 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 ACP6Q9NPH0 428 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 FAM207AQ9NSI2 230 aaPredicted RBP13.09□□□□□ -0.31
SLIRP-209ENST00000557342 RASAL2Q9UJF2 1139 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 NUDT5Q9UKK9 219 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 ZNF510Q9Y2H8 683 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 SIK3Q9Y2K2 1263 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 KIAA1549LQ6ZVL6 1849 aa13.09□□□□□ -0.31
SLIRP-209ENST00000557342 ZDBF2Q9HCK1 2354 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 OTOL1A6NHN0 477 aaPredicted RBP13.08□□□□□ -0.32
SLIRP-209ENST00000557342 YJEFN3A6XGL0 299 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 E7ENQ6 273 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 F8VZ95 297 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 PIK3R2O00459 728 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 TRDMT1O14717 391 aaKnown RBP13.08□□□□□ -0.32
SLIRP-209ENST00000557342 MDM4O15151 490 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 ADH1CP00326 375 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 GJA4P35212 333 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 POLR2FP61218 127 aaKnown RBP13.08□□□□□ -0.32
SLIRP-209ENST00000557342 EFEMP1Q12805 493 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 GRSF1Q12849 480 aaKnown RBP eCLIP13.08□□□□□ -0.32
SLIRP-209ENST00000557342 IQCB1Q15051 598 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 PON2Q15165 354 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 BHLHA9Q7RTU4 235 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 TMEM110Q86TL2 294 aa13.08□□□□□ -0.32
SLIRP-209ENST00000557342 MIB1Q86YT6 1006 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms