RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 COPS5Q92905 334 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ACAP3Q96P50 834 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 FAM111AQ96PZ2 611 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 FDXACB1Q9BRP7 624 aaPredicted RBP14.02□□□□□ -0.16
SHMT2-222ENST00000555774 RNPEPQ9H4A4 650 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 ZC3H7BQ9UGR2 993 aaKnown RBP14.02□□□□□ -0.16
SHMT2-222ENST00000555774 DERAQ9Y315 318 aa14.02□□□□□ -0.16
SHMT2-222ENST00000555774 TPSB2P20231 275 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 EPHB2P29323 1055 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 TPSAB1Q15661 275 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 POTEAQ6S8J7 498 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 TMEM110Q86TL2 294 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 FAM172AQ8WUF8 416 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 PTCD3Q96EY7 689 aaKnown RBP14.02□□□□□ -0.17
SHMT2-222ENST00000555774 CFAP36Q96G28 342 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 NSL1Q96IY1 281 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 ZNF570Q96NI8 536 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 RBPJLQ9UBG7 517 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 HEY2Q9UBP5 337 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 DCTN4Q9UJW0 460 aa14.02□□□□□ -0.17
SHMT2-222ENST00000555774 OTOFQ9HC10 1997 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 A0A0G2JND7 137 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 LIN7AO14910 233 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 KRT38O76015 456 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 LGALS2P05162 132 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 ATP5BP06576 529 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 NEFHP12036 1026 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 RBL1P28749 1068 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 SCNN1AP37088 669 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 GRM5P41594 1212 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 OVGP1Q12889 678 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 CDO1Q16878 200 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 DPH6Q7L8W6 267 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 DDX51Q8N8A6 666 aaKnown RBP eCLIP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 SHCBP1Q8NEM2 672 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PCDH19Q8TAB3 1148 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 TTC17Q96AE7 1141 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 C7orf26Q96N11 449 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 SRPK1Q96SB4 655 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 BTBD10Q9BSF8 475 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 SNRNP25Q9BV90 132 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 TMEM120AQ9BXJ8 343 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 KCNK13Q9HB14 408 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PPP1R1BQ9UD71 204 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 RGS17Q9UGC6 210 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 KCNH4Q9UQ05 1017 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 AKT3Q9Y243 479 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 TRIM49D1C9J1S8 452 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 KIF1CO43896 1103 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 GCATO75600 419 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PIAS1O75925 651 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 APOEP02649 317 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 DLDP09622 509 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 TPBGLP0DKB5 382 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 BGNP21810 368 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 MAGEA3P43357 314 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PTPN9P43378 593 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 NR2C2P49116 596 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 SERPINB9P50453 376 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 NRLP54845 237 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 ARHGAP1Q07960 439 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 DBN1Q16643 649 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 DCAF4L1Q3SXM0 396 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 ATG16L1Q676U5 607 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 ARCQ7LC44 396 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 APBB1IPQ7Z5R6 666 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 CAND1Q86VP6 1230 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PPM1NQ8N819 430 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 MIEF2Q96C03 454 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 CPB2Q96IY4 423 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PIWIL1Q96J94 861 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 GCOM2Q9BZD3 368 aaPredicted RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 R3HDMLQ9H3Y0 253 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PLEKHA5Q9HAU0 1116 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 TXNRD2Q9NNW7 524 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 NGRNQ9NPE2 291 aaKnown RBP14.01□□□□□ -0.17
SHMT2-222ENST00000555774 PLLPQ9Y342 182 aa14.01□□□□□ -0.17
SHMT2-222ENST00000555774 MGAMO43451 1857 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 SPDYE5A6NIY4 337 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 I3L4J1 428 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 TSPAN1O60635 241 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 CAPN15O75808 1086 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 IGBP1P78318 339 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 MTM1Q13496 603 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 SCYL2Q6P3W7 929 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 CYS1Q717R9 158 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 PRPF39Q86UA1 669 aaKnown RBP14□□□□□ -0.17
SHMT2-222ENST00000555774 CTAGE3PQ8IX95 158 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 VPS52Q8N1B4 723 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 ZBTB10Q96DT7 871 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 OTUD5Q96G74 571 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 NUDCD1Q96RS6 583 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 C12orf65Q9H3J6 166 aaKnown RBP14□□□□□ -0.17
SHMT2-222ENST00000555774 MMADHCQ9H3L0 296 aaPredicted RBP14□□□□□ -0.17
SHMT2-222ENST00000555774 ELP3Q9H9T3 547 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 PRDM16Q9HAZ2 1276 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 KCNK4Q9NYG8 393 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 HESX1Q9UBX0 185 aa14□□□□□ -0.17
SHMT2-222ENST00000555774 AVILO75366 819 aa13.99□□□□□ -0.17
SHMT2-222ENST00000555774 ZBTB16Q05516 673 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms