RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 PRAMEF10O60809 474 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 ATXN1LP0C7T5 689 aaKnown RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 TXNP10599 105 aaKnown RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 HARSP12081 509 aaKnown RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 IL1R1P14778 569 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 ITGALP20701 1170 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 FGFR2P21802 821 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 CARSP49589 748 aaKnown RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 ELLP55199 621 aaPredicted RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 RPS7P62081 194 aaKnown RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 FPGSQ05932 587 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 FOXF2Q12947 444 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 CHAF1AQ13111 956 aaPredicted RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 STK3Q13188 491 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 DYRK1AQ13627 763 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 PMS2P11Q13670 270 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 ZDHHC24Q6UX98 284 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 BEND5Q7L4P6 421 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 GAS2L3Q86XJ1 694 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 YAF2Q8IY57 180 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 TXLNBQ8N3L3 684 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 ENAHQ8N8S7 591 aaPredicted RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 MYCBPAPQ8TBZ2 947 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 KIAA1191Q96A73 305 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 PPP1R9BQ96SB3 815 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 MESP1Q9BRJ9 268 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 DUSP26Q9BV47 211 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 SMOC2Q9H3U7 446 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 XPNPEP3Q9NQH7 507 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 TRMT13Q9NUP7 481 aaKnown RBP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 TBC1D23Q9NUY8 699 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 LRIT1Q9P2V4 623 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 ZNF212Q9UDV6 495 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 ADAM21Q9UKJ8 722 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 HDAC9Q9UKV0 1011 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 SHOC2Q9UQ13 582 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 LRCH1Q9Y2L9 728 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 CEP83Q9Y592 693 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 UTP18Q9Y5J1 556 aaKnown RBP eCLIP1.82□□□□□ -2.12
PRPF39-208ENST00000554785 SLIT1O75093 1534 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 CCDC141Q6ZP82 1450 aa1.82□□□□□ -2.12
PRPF39-208ENST00000554785 RGPD1P0DJD0 1748 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 DHX29Q7Z478 1369 aaKnown RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 SPATA31A3Q5VYP0 1347 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 LOC102723971A0A1B0GUV8 181 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 WIPF3A6NGB9 483 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 F5H423 210 aaPredicted RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 F5H697 171 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 RAB27BO00194 218 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 AREL1O15033 823 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 TRIAP1O43715 76 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 EIF3JO75822 258 aaKnown RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 INMTO95050 263 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 RHOP08100 348 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 PPP3CBP16298 524 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 BTF3P20290 206 aaKnown RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ABCB4P21439 1286 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ACVR2AP27037 513 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 IL1R2P27930 398 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ITPKBP27987 946 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 LRPAP1P30533 357 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 PPM1AP35813 382 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 FOLR3P41439 243 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 TECP42680 631 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 PXNP49023 591 aaPredicted RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ZNF134P52741 427 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 LOXL3P58215 753 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 LILRA4P59901 499 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 KRT17Q04695 432 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 SLC29A2Q14542 456 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 HLXQ14774 488 aaPredicted RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 INSCQ1MX18 579 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 SLC35G1Q2M3R5 365 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 MGAT5BQ3V5L5 792 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 PREPLQ4J6C6 727 aaPredicted RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 PLA1AQ53H76 456 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 RRAGBQ5VZM2 374 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 KAZNQ674X7 775 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 TMEM108Q6UXF1 575 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 CATSPERGQ6ZRH7 1159 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 PEG10Q86TG7 708 aaKnown RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 GLCCI1Q86VQ1 547 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ZNF280BQ86YH2 543 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 MYLK4Q86YV6 388 aaPredicted RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 SYTL1Q8IYJ3 562 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 COLGALT2Q8IYK4 626 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ADGRG5Q8IZF4 528 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 SLC9A6Q92581 669 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ZNF566Q969W8 418 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 DHX36Q9H2U1 1008 aaKnown RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 MYH16Q9H6N6 1097 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 GJB4Q9NTQ9 266 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ARPP21Q9UBL0 812 aaPredicted RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 MID2Q9UJV3 735 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 ST3GAL5Q9UNP4 418 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 TBC1D30Q9Y2I9 924 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 RIPOR2Q9Y4F9 1068 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 PCDHGB2Q9Y5G2 931 aa1.81□□□□□ -2.12
PRPF39-208ENST00000554785 RGPD8O14715 1765 aaPredicted RBP1.81□□□□□ -2.12
PRPF39-208ENST00000554785 RALGAPBQ86X10 1494 aa1.81□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms