RNA–Protein interactions for RNA: ENST00000554310.5

SHMT2-211, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 579 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-211ENST00000554310 NAGPAQ9UK23 515 aa13.74□□□□□ -0.21
SHMT2-211ENST00000554310 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.74□□□□□ -0.21
SHMT2-211ENST00000554310 SH3BP1Q9Y3L3 701 aa13.74□□□□□ -0.21
SHMT2-211ENST00000554310 PCDHGA2Q9Y5H1 932 aa13.74□□□□□ -0.21
SHMT2-211ENST00000554310 EP300Q09472 2414 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-211ENST00000554310 OTOGLQ3ZCN5 2332 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 PAPSS2O95340 614 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-211ENST00000554310 RALAP11233 206 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 RARGP13631 454 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 PRKCSHP14314 528 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-211ENST00000554310 TKTL1P51854 596 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 CSTF1Q05048 431 aaKnown RBP13.73□□□□□ -0.21
SHMT2-211ENST00000554310 GAS6Q14393 721 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 FBXO43Q4G163 708 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 PKDCCQ504Y2 493 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 SCD5Q86SK9 330 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 CD101Q93033 1021 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 NKD2Q969F2 451 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-211ENST00000554310 KREMEN1Q96MU8 473 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 LINC00597Q9H2U6 94 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 LRRC4Q9HBW1 653 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 DNMT3LQ9UJW3 386 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 CNTN6Q9UQ52 1028 aa13.73□□□□□ -0.21
SHMT2-211ENST00000554310 PRR23AA6NEV1 266 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 M0QYV0 167 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 SCAMP3O14828 347 aaKnown RBP13.72□□□□□ -0.21
SHMT2-211ENST00000554310 GFRA3O60609 400 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 TBX18O95935 607 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 ZBED1O96006 694 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 KRT5P13647 590 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 BRD2P25440 801 aaKnown RBP13.72□□□□□ -0.21
SHMT2-211ENST00000554310 CXCL12P48061 93 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 MFAP3P55082 362 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 YWHAGP61981 247 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHMT2-211ENST00000554310 ADIGQ0VDE8 80 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 DHCR24Q15392 516 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 CNGA2Q16280 664 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 MEA1Q16626 185 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 EXOC3L4Q17RC7 722 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 C10orf120Q5SQS8 335 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 PM20D1Q6GTS8 502 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 ADGRG2Q8IZP9 1017 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 SIX6OS1Q8N1H7 587 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 CCDC26Q8TAB7 109 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 KCTD13Q8WZ19 329 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 TFAP2BQ92481 460 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 NELL1Q92832 810 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 CRACR2AQ9BSW2 395 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 KLF16Q9BXK1 252 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-211ENST00000554310 CBX8Q9HC52 389 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 UBE2TQ9NPD8 197 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-211ENST00000554310 ANO10Q9NW15 660 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 ZSCAN32Q9NX65 697 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 APEX2Q9UBZ4 518 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 LSM7Q9UK45 103 aaKnown RBP13.72□□□□□ -0.21
SHMT2-211ENST00000554310 R4GN57 208 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 ZNF292O60281 2723 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 DMDP11532 3685 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 GPR179Q6PRD1 2367 aa13.72□□□□□ -0.21
SHMT2-211ENST00000554310 ESPNB1AK53 854 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 PALM2-AKAP2B1ALY0 433 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 RNF225M0QZC1 329 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 TULP2O00295 520 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 EGFP01133 1207 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 IRF1P10914 325 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 ADH5P11766 374 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 TDGF1P13385 188 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 EEF1GP26641 437 aaKnown RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 OPRD1P41143 372 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 EIF2DP41214 584 aaKnown RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 GALK1P51570 392 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 NRLP54845 237 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 GAB4Q2WGN9 574 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 NAIF1Q69YI7 327 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 HTR3DQ70Z44 454 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 RSRC2Q7L4I2 434 aaKnown RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 BBS7Q8IWZ6 715 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 SCML4Q8N228 414 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 ZBTB44Q8NCP5 570 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 UBA3Q8TBC4 463 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 SECISBP2LQ93073 1101 aaKnown RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 ZSWIM1Q9BR11 485 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 ULBP1Q9BZM6 244 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 CNGB3Q9NQW8 809 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 PTPRZ1P23471 2315 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-211ENST00000554310 MYOFQ9NZM1 2061 aa13.71□□□□□ -0.21
SHMT2-211ENST00000554310 VPS13AQ96RL7 3174 aa13.71□□□□□ -0.22
SHMT2-211ENST00000554310 CHURC1-FNTBB4DL54 471 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 KCNJ18B7U540 433 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 HOXC11O43248 304 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-211ENST00000554310 GREM1O60565 184 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 ATG13O75143 517 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 RNF40O75150 1001 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 ADCY5O95622 1261 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 SLC9A1P19634 815 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 PON1P27169 355 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 ZNF165P49910 485 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 SATB1Q01826 763 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 KCNJ12Q14500 433 aa13.7□□□□□ -0.22
SHMT2-211ENST00000554310 VWA3BQ502W6 1294 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms