RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 CLEC4CQ8WTT0 213 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 SLC35F5Q8WV83 523 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 ATP2A3Q93084 1043 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 NACA2Q9H009 215 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 VPS16Q9H269 839 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 CHRDQ9H2X0 955 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 CYLDQ9NQC7 956 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 HESX1Q9UBX0 185 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 APEX2Q9UBZ4 518 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 DNAJC12Q9UKB3 198 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 KIAA1257Q9ULG3 409 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 R4GN57 208 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 VPS13AQ96RL7 3174 aa12.18□□□□□ -0.46
CCDC88C-208ENST00000554165 FAM170AA1A519 330 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 GTPBP10A4D1E9 387 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 YJEFN3A6XGL0 299 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 E7ENQ6 273 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 FOXN3O00409 490 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 TRDMT1O14717 391 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 NCAM2O15394 837 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 HMBSP08397 361 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 SP9P0CG40 484 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 ATP5C1P36542 298 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 OPRD1P41143 372 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 RPS9P46781 194 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 PLA2G4AP47712 749 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 SLC6A11P48066 632 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 MFAP3P55082 362 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 YWHAGP61981 247 aaKnown RBP eCLIP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 CSTF1Q05048 431 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 TYRO3Q06418 890 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 CCINQ13939 588 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 DHCR24Q15392 516 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 STX1AQ16623 288 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 TMEM196Q5HYL7 178 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 CT47A1Q5JQC4 288 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 LY6G5CQ5SRR4 150 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 PM20D1Q6GTS8 502 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 ALYREFQ86V81 257 aaKnown RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 C12orf40Q86WS4 652 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 CPA6Q8N4T0 437 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 SHC3Q92529 594 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 EDEM1Q92611 657 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 P2RY11Q96G91 374 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 HSD3B7Q9H2F3 369 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 LRRC4Q9HBW1 653 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 ANO10Q9NW15 660 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 CYTH4Q9UIA0 394 aa12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 PTPRZ1P23471 2315 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 EP300Q09472 2414 aaPredicted RBP12.17□□□□□ -0.46
CCDC88C-208ENST00000554165 E2F8A0AVK6 867 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 THAP12O43422 761 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 LAMTOR5O43504 91 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 KLKB1P03952 638 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 SETSIPP0DME0 302 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 SLC8A3P57103 927 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 SATB1Q01826 763 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 DMWDQ09019 674 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 EFEMP1Q12805 493 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 NCAPHQ15003 741 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 TMEM25Q86YD3 366 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 ZNF606Q8WXB4 792 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 KCTD13Q8WZ19 329 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 P2RY13Q9BPV8 354 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 LSM14BQ9BX40 385 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 MIS12Q9H081 205 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 CLIC5Q9NZA1 410 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 TJP2Q9UDY2 1190 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 RASAL2Q9UJF2 1139 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 DNMT3LQ9UJW3 386 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 SH3BP1Q9Y3L3 701 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 FHOD1Q9Y613 1164 aa12.16□□□□□ -0.46
CCDC88C-208ENST00000554165 TRIM24O15164 1050 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 EPHB6O15197 1021 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 STC2O76061 302 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 NFATC1O95644 943 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 EEF1GP26641 437 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 GNA15P30679 374 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 CLCN1P35523 988 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 GPD2P43304 727 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 DAOAP59103 153 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 GRSF1Q12849 480 aaKnown RBP eCLIP12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 DRAP1Q14919 205 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 KLHDC7AQ5VTJ3 777 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 BSPRYQ5W0U4 402 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 HTR3DQ70Z44 454 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 ENOSF1Q7L5Y1 443 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 DDX42Q86XP3 938 aaKnown RBP eCLIP12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 PASD1Q8IV76 773 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 SIX6OS1Q8N1H7 587 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 AOPEPQ8N6M6 819 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 NAT16Q8N8M0 369 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 CD101Q93033 1021 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 MSANTD3Q96H12 275 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 SFMBT1Q9UHJ3 866 aa12.15□□□□□ -0.46
CCDC88C-208ENST00000554165 SLC12A8A0AV02 714 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 SLC9A3R1O14745 358 aaPredicted RBP12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 MSI1O43347 362 aaKnown RBP12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 RNF40O75150 1001 aa12.14□□□□□ -0.47
CCDC88C-208ENST00000554165 RALAP11233 206 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms