RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 UBA3Q8TBC4 463 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 SLC35F5Q8WV83 523 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 CD101Q93033 1021 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 GBP4Q96PP9 640 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 CRACR2AQ9BSW2 395 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 THAP9Q9H5L6 903 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 CLIC5Q9NZA1 410 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 TBC1D14Q9P2M4 693 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 NAGPAQ9UK23 515 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 NUDT5Q9UKK9 219 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 PCDHGA2Q9Y5H1 932 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 TICRRQ7Z2Z1 1910 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 DNAH14Q0VDD8 3507 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 OBSL1O75147 1896 aa10.81□□□□□ -0.68
CCDC88C-206ENST00000553437 KMT2BQ9UMN6 2715 aaPredicted RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 CACNA1IQ9P0X4 2223 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 ANTXRLA6NF34 631 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 CHURC1-FNTBB4DL54 471 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 SETSIPP0DME0 302 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 CHRM1P11229 460 aaPredicted RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 SLC9A1P19634 815 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 BRD2P25440 801 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 SLC6A11P48066 632 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 TKTL1P51854 596 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 SLC8A3P57103 927 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 APBA1Q02410 837 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 MESP2Q0VG99 397 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 BST2Q10589 180 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 LY6G5CQ5SRR4 150 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 DPY19L2P1Q6NXN4 242 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 GJB7Q6PEY0 223 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 TRIM65Q6PJ69 517 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 ZC3H14Q6PJT7 736 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 C12orf40Q86WS4 652 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 CREBRFQ8IUR6 639 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 KCTD13Q8WZ19 329 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 NDRG1Q92597 394 aaKnown RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 OTUB2Q96DC9 234 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 FAM126AQ9BYI3 521 aaPredicted RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 ULBP1Q9BZM6 244 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 NACA2Q9H009 215 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 UBE2TQ9NPD8 197 aaPredicted RBP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 HESX1Q9UBX0 185 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 DNMT3LQ9UJW3 386 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 SH3BP1Q9Y3L3 701 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 DENND4CQ5VZ89 1909 aa10.8□□□□□ -0.68
CCDC88C-206ENST00000553437 PTPRZ1P23471 2315 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 A0A0A0MRY4 1105 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 GTPBP10A4D1E9 387 aaKnown RBP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 K7EQS6 105 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 RNF40O75150 1001 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 ZBED1O96006 694 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 LMNAP02545 664 aaKnown RBP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 KLKB1P03952 638 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 IRF1P10914 325 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 RALAP11233 206 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 PON1P27169 355 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 HOXA6P31267 233 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 YWHAGP61981 247 aaKnown RBP eCLIP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 DMWDQ09019 674 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 FBXO43Q4G163 708 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 CT47A1Q5JQC4 288 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 MIIPQ5JXC2 388 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 C10orf120Q5SQS8 335 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 PMF1Q6P1K2 205 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 Q6ZNB5 142 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 TMEM25Q86YD3 366 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 SFTPA1Q8IWL2 248 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 ETFBKMTQ8IXQ9 262 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 SCML4Q8N228 414 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 ARHGAP18Q8N392 663 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 PHTF2Q8N3S3 785 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 SUMF1Q8NBK3 374 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 ATRIPQ8WXE1 791 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 SECISBP2LQ93073 1101 aaKnown RBP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 EXOC4Q96A65 974 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 LRRC4Q9HBW1 653 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 SIX2Q9NPC8 291 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 POLR3BQ9NW08 1133 aaPredicted RBP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 DACH1Q9UI36 760 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 METRNQ9UJH8 293 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 ANAPC1Q9H1A4 1944 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 CFAP47Q6ZTR5 3102 aa10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 RIF1Q5UIP0 2472 aaKnown RBP10.79□□□□□ -0.68
CCDC88C-206ENST00000553437 BECN2A8MW95 431 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 HOXC11O43248 304 aaPredicted RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 ATG13O75143 517 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 STC2O76061 302 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 ADH1CP00326 375 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 ADH5P11766 374 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 EIF2DP41214 584 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 GPD2P43304 727 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 MTIF2P46199 727 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 RPL34P49207 117 aaKnown RBP10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 RGS7P49802 495 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 NRLP54845 237 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 GAD2Q05329 585 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 ADIGQ0VDE8 80 aa10.78□□□□□ -0.68
CCDC88C-206ENST00000553437 PPP2R5DQ14738 602 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms