RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 OR5B17Q8NGF7 314 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 C1orf216Q8TAB5 229 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 CACTINQ8WUQ7 758 aaKnown RBP13.73□□□□□ -0.21
VPS29-211ENST00000553128 HPDLQ96IR7 371 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 SLITRK1Q96PX8 696 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 CDC6Q99741 560 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 MKRN2Q9H000 416 aaKnown RBP13.73□□□□□ -0.21
VPS29-211ENST00000553128 USP36Q9P275 1121 aaKnown RBP13.73□□□□□ -0.21
VPS29-211ENST00000553128 EIF2B4Q9UI10 523 aaKnown RBP13.73□□□□□ -0.21
VPS29-211ENST00000553128 LIMCH1Q9UPQ0 1083 aa13.73□□□□□ -0.21
VPS29-211ENST00000553128 NEDD8-MDP1E9PL57 170 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 KCNK3O14649 394 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 BCAT2O15382 392 aaPredicted RBP13.72□□□□□ -0.21
VPS29-211ENST00000553128 FLRT2O43155 660 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 TYRP14679 529 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 WARSP23381 471 aaKnown RBP13.72□□□□□ -0.21
VPS29-211ENST00000553128 YWHAQP27348 245 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 DDIT3P35638 169 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 CSNK1EP49674 416 aaKnown RBP13.72□□□□□ -0.21
VPS29-211ENST00000553128 CASP5P51878 434 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 HMGN5P82970 282 aaKnown RBP13.72□□□□□ -0.21
VPS29-211ENST00000553128 POSTNQ15063 836 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 MAPRE1Q15691 268 aaKnown RBP13.72□□□□□ -0.21
VPS29-211ENST00000553128 PTPRNQ16849 979 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 FUT11Q495W5 492 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 PCSK4Q6UW60 755 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 TPGS1Q6ZTW0 290 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 DPH6Q7L8W6 267 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 SCAMP5Q8TAC9 235 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 NOC3LQ8WTT2 800 aaKnown RBP13.72□□□□□ -0.21
VPS29-211ENST00000553128 FBXO32Q969P5 355 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 CBWD1Q9BRT8 395 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 FGFBP2Q9BYJ0 223 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 PCIF1Q9H4Z3 704 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 EHD2Q9NZN4 543 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 TBC1D7Q9P0N9 293 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 GMIPQ9P107 970 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 NFE2L3Q9Y4A8 694 aa13.72□□□□□ -0.21
VPS29-211ENST00000553128 MUC22E2RYF6 1773 aaPredicted RBP13.72□□□□□ -0.21
VPS29-211ENST00000553128 METTL12A8MUP2 240 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 CACNG3O60359 315 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 TMEM191BP0C7N4 346 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 CISD3P0C7P0 127 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 ABCD1P33897 745 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 EIF2S3P41091 472 aaKnown RBP13.71□□□□□ -0.21
VPS29-211ENST00000553128 TPMTP51580 245 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 KIF19Q2TAC6 998 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 PREPLQ4J6C6 727 aaPredicted RBP13.71□□□□□ -0.21
VPS29-211ENST00000553128 HECTD3Q5T447 861 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 LAYNQ6UX15 382 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 NUDT18Q6ZVK8 323 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 DYMQ7RTS9 669 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 NUP93Q8N1F7 819 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 SCFD1Q8WVM8 642 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 BHMTQ93088 406 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 CALML4Q96GE6 196 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 KCNK16Q96T55 309 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 MMS19Q96T76 1030 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 BBS2Q9BXC9 721 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 B3GNT5Q9BYG0 378 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 ITM2CQ9NQX7 267 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 PCDHGB2Q9Y5G2 931 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 SNX11Q9Y5W9 270 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 NAV2Q8IVL1 2488 aa13.71□□□□□ -0.21
VPS29-211ENST00000553128 TNFSF14O43557 240 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 TBX18O95935 607 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 PTPN1P18031 435 aaKnown RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 GNL1P36915 607 aaPredicted RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 UBA7P41226 1012 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 RILPL1Q5EBL4 403 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 L1TD1Q5T7N2 865 aaKnown RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 ARL6IP4Q66PJ3 421 aaKnown RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 MCTP1Q6DN14 999 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 IL27RAQ6UWB1 636 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 METTL3Q86U44 580 aaKnown RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 CACUL1Q86Y37 369 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 CADM4Q8NFZ8 388 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 LARP4BQ92615 738 aaKnown RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 HVCN1Q96D96 273 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 FCRL3Q96P31 734 aaPredicted RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 DUSP9Q99956 384 aaKnown RBP13.7□□□□□ -0.22
VPS29-211ENST00000553128 INTS13Q9NVM9 706 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 PLK2Q9NYY3 685 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 STON1Q9Y6Q2 735 aa13.7□□□□□ -0.22
VPS29-211ENST00000553128 GFRA2O00451 464 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 HLA-EP13747 358 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 IL12RB1P42701 662 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 DGKGP49619 791 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 IL9RQ01113 521 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 SEMG2Q02383 582 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 KCNT1Q5JUK3 1230 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 SNX30Q5VWJ9 437 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 PDZD8Q8NEN9 1154 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 OR6B3Q8NGW1 331 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 ANKRD36BP1Q96IX9 119 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 AK8Q96MA6 479 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 ACCSQ96QU6 501 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 XPO6Q96QU8 1125 aaKnown RBP13.69□□□□□ -0.22
VPS29-211ENST00000553128 ELOVL4Q9GZR5 314 aa13.69□□□□□ -0.22
VPS29-211ENST00000553128 MRPL44Q9H9J2 332 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms