RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ATP5DP30049 168 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TNFSF9P41273 254 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 OR1G1P47890 313 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 RASSF2P50749 326 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 DRG2P55039 364 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 SH3BGRP55822 239 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MCL1Q07820 350 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 HYAL1Q12794 435 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ALCAMQ13740 583 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 DHX34Q14147 1143 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ZDHHC24Q6UX98 284 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ALKAL1Q6UXT8 129 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TAS1R1Q7RTX1 841 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ZC3H18Q86VM9 953 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MAP4K3Q8IVH8 894 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 HACE1Q8IYU2 909 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ANKRD42Q8N9B4 389 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TTC8Q8TAM2 541 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 FBXO25Q8TCJ0 367 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 AUTS2Q8WXX7 1259 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ARHGEF2Q92974 986 aaKnown RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 FAM193BQ96PV7 902 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ROPN1BQ9BZX4 212 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MYLK2Q9H1R3 596 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ST6GALNAC4Q9H4F1 302 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 IGFLR1Q9H665 355 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 ROPN1Q9HAT0 212 aaPredicted RBP8.01□□□□□ -1.13
LIMA1-216ENST00000552909 TLR9Q9NR96 1032 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 AGPAT3Q9NRZ7 376 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 MARCH5Q9NX47 278 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 GALNT8Q9NY28 637 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 SNX24Q9Y343 169 aa8.01□□□□□ -1.13
LIMA1-216ENST00000552909 CASTOR2A6NHX0 329 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 SIGLEC16A6NMB1 481 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 TULP1O00294 542 aaPredicted RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 KIAA0391O15091 583 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 LINC01565O15544 149 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 RIPK2O43353 540 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 FAM189A1O60320 539 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ENTPD5O75356 428 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 AKAP3O75969 853 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 MCF2P10911 925 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 DESP17661 470 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 TARSP26639 723 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 ADSSP30520 456 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 STX2P32856 288 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 PPM1AP35813 382 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 GRM5P41594 1212 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 CASP4P49662 377 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 LIG4P49917 911 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 CYP2J2P51589 502 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 SESN3P58005 492 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 OCRLQ01968 901 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 DLX2Q07687 328 aaPredicted RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 SLC10A6Q3KNW5 377 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 PLPP4Q5VZY2 271 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 TMC7Q7Z402 723 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 SLFN11Q7Z7L1 901 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 JAMLQ86YT9 394 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ZC3H3Q8IXZ2 948 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 RDH13Q8NBN7 331 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ZSWIM2Q8NEG5 633 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 GDAP1Q8TB36 358 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 AZIN2Q96A70 460 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ERP27Q96DN0 273 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 TMEM169Q96HH4 297 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 HES6Q96HZ4 224 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 RUNDC3BQ96NL0 473 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 TCF25Q9BQ70 676 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 TBC1D10AQ9BXI6 508 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 LMAN2LQ9H0V9 348 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 PCIF1Q9H4Z3 704 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 OCEL1Q9H607 264 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 NSUN3Q9H649 340 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 GOLGA2P5Q9HBQ8 144 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 PREBQ9HCU5 417 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 MLXIPLQ9NP71 852 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 KCNK9Q9NPC2 374 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 HAO1Q9UJM8 370 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 EXOC7Q9UPT5 735 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 GMEB1Q9Y692 573 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ZMYM2Q9UBW7 1377 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 TCF20Q9UGU0 1960 aaKnown RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 UBE4BO95155 1302 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 A0A0B4J269 797 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 SMIM28A0A1B0GU29 152 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 H0YCG3 227 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 ECEL1O95672 775 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 PIGRP01833 764 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 THP07101 528 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 CXCL8P10145 99 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 EPHB2P29323 1055 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 LTBRP36941 435 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 NRIP1P48552 1158 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 KRT17Q04695 432 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 UBE3AQ05086 875 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 PTK2Q05397 1052 aa8□□□□□ -1.13
LIMA1-216ENST00000552909 SOX4Q06945 474 aaPredicted RBP8□□□□□ -1.13
LIMA1-216ENST00000552909 KPNB1Q14974 876 aaKnown RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms